Principal Component Analysis and Cluster Analysis of Amino Acids in Seabuckthorn Fruit

doi:10.6048/j.issn.1001-4330.2023.02.015

Xinjiang Agricultural Sciences ›› 2023, Vol. 60 ›› Issue (2): 378-388.DOI: 10.6048/j.issn.1001-4330.2023.02.015

• Horticultural Special Local Products·Plant Protection·Microbes·Soil Fertilizer· Water Saving Irrigation • Previous Articles Next Articles

Principal Component Analysis and Cluster Analysis of Amino Acids in Seabuckthorn Fruit

MA Xu¹(), ZHAO Ying²(), HAN Wei¹, WU Shengli¹, HAN Xiaoyan³

1. School of Geographic Science and tourism, Xinjiang Normal University / Key Laboratory of lake environment and resources in arid regions, Urumqi 830054,China
2. Xinjiang Aksu forestry and grassland Bureau,Aksu Xinjiang 843006,China
3. Wushi County Forestry and grassland Bureau,Aksu Xinjiang 843400,China

Received:2022-03-13 Online:2023-02-20 Published:2023-03-31
Correspondence author: ZHAO Ying (1977-), female, researcher, master's supervisor, research direction: fruit tree breeding, (E-mail)zy2665353@126.com
Supported by:
Central Financial Forestry Science and Technology Promotion Demonstration Project "Demonstration and Promotion of Excellent Varieties of Large Fruit Sea Buckthorn and Standardized Cultivation Technology"(New [2018]TG 24)

14种沙棘果实中氨基酸组成的主成分分析与综合评价

马旭¹(), 赵英²(), 韩炜¹, 武胜利¹, 韩晓燕³

1.新疆师范大学地理科学与旅游学院/新疆干旱区湖泊环境与资源重点实验室,乌鲁木齐 830054
2.阿克苏地区林业技术推广服务中心,新疆阿克苏 843006
3.乌什县林业与草原局,新疆阿克苏 843400

通讯作者: 赵英(1977-),女,研究员,硕士生导师,研究方向为果树育种,(E-mail)zy2665353@126.com
作者简介:马旭(1995-),女,新疆博乐人,硕士研究生,研究方向为果树育种,(E-mail)2391765868@qq.com
基金资助:
中央财政林业科技推广示范项目“大果沙棘优良品种繁育及标准化栽培技术示范与推广”(New [2018]TG 24)

Abstract

Abstract:

【Objective】 In order to study the differences of amino acid content and composition of different seabuckthorn varieties, 15 seabuckthorn varieties in Qinghe County were studied, and the amino acid types and content were detected quickly by amino acid automatic analyzer. 【Methods】 The amino acid contents of 15 Seabuckthorn fruits were comprehensively evaluated by correlation, principal component analysis and cluster analysis. 【Results】 There were relative independence and close correlation among 15 quality indexes of seabuckthorn fruit; According to the comprehensive score of principal factors of principal component analysis, the top 5 seabuckthorn varieties ranked by 15 seabuckthorn varieties were BT-06-04, QH-03-02, BT-08-02, HK-01-01 and proposed QH-03-03, followed by late autumn red, anjr and HH-09-01. 【Conclusion】 Three principal components were extracted by principal component analysis, and the cumulative variance contribution rate was 88.296%. A comprehensive evaluation model was obtained: F=0.802F₁+0.122F₂+0.076F₃, which better reflected the comprehensive information of amino acids in seabuckthorn fruit. Fifteen Seabuckthorn fruits were divided into three categories by systematic cluster analysis. The cluster results were consistent with the results of principal component analysis, which better reflected the differences among different germplasm of seabuckthorn fruits.

Key words: seabuckthorn; fruit; correlation analysis; principal component analysis; cluster analysis; comprehensive evaluation

摘要：

【目的】 研究不同沙棘优株果实中氨基酸含量和组成成分,为沙棘良种选育提供理论依据。【方法】 以阿勒泰地区14种沙棘优株为研究对象,以新疆主栽品种深秋红为对照,采用氨基酸自动分析仪快速检测氨基酸种类及含量,运用相关性分析、主成分分析法及聚类分析法对沙棘果实中氨基酸含量进行综合评价。【结果】 14种沙棘果实氨基酸指标之间存在相对独立性和密切相关性,其中缬氨酸和异亮氨酸极显著相关(r=0.982,P<0.01)。14种沙棘果实综合排名前5位的依次为BT-06-04、QH-03-02、BT-08-02、HK-01-01、拟QH-03-02,排名居后的为:深秋红、ANJR、HH-09-01。主成分分析提取3个主成分,累计方差贡献率为88.296%,得到综合评价模型:F=0.802F₁+0.122F₂+0.076F₃,较好地反映沙棘果实氨基酸的综合信息。14种沙棘果实分为3类,该聚类结果与主成分分析结果一致,较好地反映出沙棘果实不同种质间的差异性。【结论】 BT-06-04、QH-03-02、BT-08-02的氨基酸含量最高,可作为沙棘良种选育的育种材料。

CLC Number:

S793.6

MA Xu, ZHAO Ying, HAN Wei, WU Shengli, HAN Xiaoyan. Principal Component Analysis and Cluster Analysis of Amino Acids in Seabuckthorn Fruit[J]. Xinjiang Agricultural Sciences, 2023, 60(2): 378-388.

马旭, 赵英, 韩炜, 武胜利, 韩晓燕. 14种沙棘果实中氨基酸组成的主成分分析与综合评价[J]. 新疆农业科学, 2023, 60(2): 378-388.

Figures/Tables 8

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序号 Serial number	优株名称 Name	优株来源 Excellent plant source	成熟期 Mature period	果实色泽 Fruit color	果实纵径 Longitu dinal diameter (cm)	果实横径 Transverse diameter (cm)	百果重 Baiguo seed (g)	种子千粒重 1 000 seed weight (g)	单株产量 Yield per plant (kg)
1	ANJR	青河县	9月初	橙黄色	1.138	0.868	43.210	17.712	2.360
2	QH-03-02	青河县	9月中旬	黄色	1.136	1.108	73.200	17.960	3.690
3	AHG	青河县	9月初	橙黄色	1.168	0.822	48.713	17.260	2.360
4	QA-01-01	阿勒泰市	9月初	橙黄色	1.128	0.844	56.711	16.801	2.753
5	CHNXY	青河县	8月底	橙黄色	1.126	0.9314	54.200	16.243	2.591
6	拟QH-03-02	青河县	9月初	橘黄色	1.106	0.882	61.000	20.160	3.020
7	BT-06-04	布尔津县	9月中旬	黄色	1.138	1.108	70.501	18.210	3.521
8	BT-08-02	布尔津县	9月中旬	黄色	1.030	0.950	59.714	13.280	3.493
9	HH-03-01	哈巴河县	9月中旬	橙黄色	1.164	0.966	65.000	21.440	3.566
10	HK-01-01	青河县	9月中旬	黄色	1.062	0.764	37.216	11.282	2.120
11	HK-04-01	青河县	9月初	橙黄色	1.060	0.938	48.500	15.823	2.940
12	HH-09-01	哈巴河县	9月初	橙黄色	1.0442	0.757	51.214	10.360	3.150
13	HH-02-02	哈巴河县	9月中旬	黄色	1.126	0.882	55.743	17.780	3.373
14	HH-06-01	哈巴河县	9月中旬	黄色	1.226	0.885	53.547	17.710	3.240
15	深秋红(CK)	青河县	10月中旬	红色	1.290	0.872	60.020	11.771	3.410

序号 Serial number	优株名称 Name	优株来源 Excellent plant source	成熟期 Mature period	果实色泽 Fruit color	果实纵径 Longitu dinal diameter (cm)	果实横径 Transverse diameter (cm)	百果重 Baiguo seed (g)	种子千粒重 1 000 seed weight (g)	单株产量 Yield per plant (kg)
1	ANJR	青河县	9月初	橙黄色	1.138	0.868	43.210	17.712	2.360
2	QH-03-02	青河县	9月中旬	黄色	1.136	1.108	73.200	17.960	3.690
3	AHG	青河县	9月初	橙黄色	1.168	0.822	48.713	17.260	2.360
4	QA-01-01	阿勒泰市	9月初	橙黄色	1.128	0.844	56.711	16.801	2.753
5	CHNXY	青河县	8月底	橙黄色	1.126	0.9314	54.200	16.243	2.591
6	拟QH-03-02	青河县	9月初	橘黄色	1.106	0.882	61.000	20.160	3.020
7	BT-06-04	布尔津县	9月中旬	黄色	1.138	1.108	70.501	18.210	3.521
8	BT-08-02	布尔津县	9月中旬	黄色	1.030	0.950	59.714	13.280	3.493
9	HH-03-01	哈巴河县	9月中旬	橙黄色	1.164	0.966	65.000	21.440	3.566
10	HK-01-01	青河县	9月中旬	黄色	1.062	0.764	37.216	11.282	2.120
11	HK-04-01	青河县	9月初	橙黄色	1.060	0.938	48.500	15.823	2.940
12	HH-09-01	哈巴河县	9月初	橙黄色	1.0442	0.757	51.214	10.360	3.150
13	HH-02-02	哈巴河县	9月中旬	黄色	1.126	0.882	55.743	17.780	3.373
14	HH-06-01	哈巴河县	9月中旬	黄色	1.226	0.885	53.547	17.710	3.240
15	深秋红(CK)	青河县	10月中旬	红色	1.290	0.872	60.020	11.771	3.410

氨基酸种类 Sample No.	ANJR	QH- 03-02	AHG	QA- 01-01	CHNXY	拟QH -03-02	BT- 06-04	BT- 08-02	HH- 03-01	HK- 01-01	HK- 04-01	HH- 09-01	HH- 02-02	HH- 06-01	深秋红 Late autumn red
天冬氨酸Asparticacid	0.260	0.380	0.420	0.340	0.400	0.290	0.350	0.520	0.280	0.400	0.160	0.180	0.190	0.200	0.300
苏氨酸Threonine	0.044	0.065	0.050	0.058	0.052	0.056	0.072	0.068	0.056	0.058	0.046	0.040	0.047	0.053	0.046
丝氨酸Serine	0.061	0.100	0.076	0.075	0.078	0.094	0.120	0.093	0.081	0.086	0.072	0.056	0.072	0.075	0.060
谷氨酸 Glutamic acid	0.200	0.390	0.250	0.280	0.310	0.340	0.400	0.300	0.320	0.350	0.270	0.180	0.240	0.300	0.180
甘氨酸Glycine	0.050	0.092	0.064	0.062	0.072	0.072	0.091	0.08	0.076	0.078	0.060	0.042	0.06	0.076	0.050
丙氨酸Alanine	0.048	0.100	0.078	0.054	0.064	0.076	0.078	0.078	0.067	0.068	0.048	0.035	0.050	0.074	0.044
胱氨酸 Cystine	0.023	0.017	0.025	0.030	0.038	0.037	0.038	0.045	0.030	0.032	0.028	0.029	0.030	0.013	0.026
缬氨酸Valine	0.062	0.110	0.075	0.077	0.090	0.084	0.100	0.094	0.086	0.090	0.066	0.049	0.066	0.084	0.065
甲硫氨酸Methionine	0.007	0.008	0.012	0.008	0.014	0.013	0.011	0.011	0.006	0.010	0.012	0.010	0.010	0.010	0.008
异亮氨酸Iieucine	0.047	0.081	0.056	0.062	0.065	0.066	0.081	0.074	0.068	0.072	0.053	0.039	0.053	0.066	0.051
亮氨酸 Leucine	0.079	0.140	0.097	0.100	0.120	0.120	0.140	0.120	0.120	0.120	0.094	0.067	0.090	0.110	0.079
酪氨酸Tyrosine	0.042	0.076	0.060	0.057	0.052	0.058	0.076	0.062	0.070	0.066	0.046	0.040	0.046	0.060	0.050
苯丙氨酸Phenylalanine	0.089	0.170	0.120	0.086	0.100	0.200	0.140	0.110	0.110	0.110	0.099	0.057	0.077	0.100	0.064
组氨酸Histidine	0.050	0.059	0.055	0.059	0.056	0.062	0.076	0.064	0.060	0.066	0.057	0.048	0.055	0.0560	0.055
赖氨酸Lysine	0.079	0.100	0.090	0.100	0.094	0.100	0.130	0.120	0.098	0.099	0.092	0.072	0.084	0.099	0.100
精氨酸Arginine	0.092	0.220	0.120	0.140	0.150	0.160	0.240	0.180	0.180	0.180	0.140	0.074	0.140	0.160	0.066
脯氨酸Proline	0.063	0.081	0.094	0.058	0.130	0.093	0.120	0.120	0.079	0.075	0.047	0.044	0.064	0.073	0.051
氨基酸总和 Total amino acids	1.300	2.190	1.740	1.650	1.880	1.920	2.260	2.140	1.790	1.960	1.390	1.060	1.370	1.610	1.300

氨基酸种类 Sample No.	ANJR	QH- 03-02	AHG	QA- 01-01	CHNXY	拟QH -03-02	BT- 06-04	BT- 08-02	HH- 03-01	HK- 01-01	HK- 04-01	HH- 09-01	HH- 02-02	HH- 06-01	深秋红 Late autumn red
天冬氨酸Asparticacid	0.260	0.380	0.420	0.340	0.400	0.290	0.350	0.520	0.280	0.400	0.160	0.180	0.190	0.200	0.300
苏氨酸Threonine	0.044	0.065	0.050	0.058	0.052	0.056	0.072	0.068	0.056	0.058	0.046	0.040	0.047	0.053	0.046
丝氨酸Serine	0.061	0.100	0.076	0.075	0.078	0.094	0.120	0.093	0.081	0.086	0.072	0.056	0.072	0.075	0.060
谷氨酸 Glutamic acid	0.200	0.390	0.250	0.280	0.310	0.340	0.400	0.300	0.320	0.350	0.270	0.180	0.240	0.300	0.180
甘氨酸Glycine	0.050	0.092	0.064	0.062	0.072	0.072	0.091	0.08	0.076	0.078	0.060	0.042	0.06	0.076	0.050
丙氨酸Alanine	0.048	0.100	0.078	0.054	0.064	0.076	0.078	0.078	0.067	0.068	0.048	0.035	0.050	0.074	0.044
胱氨酸 Cystine	0.023	0.017	0.025	0.030	0.038	0.037	0.038	0.045	0.030	0.032	0.028	0.029	0.030	0.013	0.026
缬氨酸Valine	0.062	0.110	0.075	0.077	0.090	0.084	0.100	0.094	0.086	0.090	0.066	0.049	0.066	0.084	0.065
甲硫氨酸Methionine	0.007	0.008	0.012	0.008	0.014	0.013	0.011	0.011	0.006	0.010	0.012	0.010	0.010	0.010	0.008
异亮氨酸Iieucine	0.047	0.081	0.056	0.062	0.065	0.066	0.081	0.074	0.068	0.072	0.053	0.039	0.053	0.066	0.051
亮氨酸 Leucine	0.079	0.140	0.097	0.100	0.120	0.120	0.140	0.120	0.120	0.120	0.094	0.067	0.090	0.110	0.079
酪氨酸Tyrosine	0.042	0.076	0.060	0.057	0.052	0.058	0.076	0.062	0.070	0.066	0.046	0.040	0.046	0.060	0.050
苯丙氨酸Phenylalanine	0.089	0.170	0.120	0.086	0.100	0.200	0.140	0.110	0.110	0.110	0.099	0.057	0.077	0.100	0.064
组氨酸Histidine	0.050	0.059	0.055	0.059	0.056	0.062	0.076	0.064	0.060	0.066	0.057	0.048	0.055	0.0560	0.055
赖氨酸Lysine	0.079	0.100	0.090	0.100	0.094	0.100	0.130	0.120	0.098	0.099	0.092	0.072	0.084	0.099	0.100
精氨酸Arginine	0.092	0.220	0.120	0.140	0.150	0.160	0.240	0.180	0.180	0.180	0.140	0.074	0.140	0.160	0.066
脯氨酸Proline	0.063	0.081	0.094	0.058	0.130	0.093	0.120	0.120	0.079	0.075	0.047	0.044	0.064	0.073	0.051
氨基酸总和 Total amino acids	1.300	2.190	1.740	1.650	1.880	1.920	2.260	2.140	1.790	1.960	1.390	1.060	1.370	1.610	1.300

优株名称 Product name	鲜味氨基酸 Fresh amino acids	药用氨基酸 Medicinal amino acids	甜味氨基酸 Sweet amino acids	芳香氨基酸 Aromatic amino acids
ANJR	0.461	0.898	0.205	0.131
QH-03-02	0.772	1.576	0.338	0.246
AHG	0.670	1.233	0.286	0.180
QA-01-01	0.621	1.173	0.232	0.143
CHNXY	0.712	1.312	0.318	0.152
拟QH-03-02	0.630	1.353	0.297	0.258
BT-06-04	0.751	1.578	0.361	0.216
BT-08-02	0.822	1.503	0.346	0.172
HH-03-01	0.610	1.26	0.278	0.180
HK-01-01	0.753	1.414	0.279	0.176
HK-04-01	0.432	0.973	0.201	0.145
HH-09-01	0.361	0.722	0.161	0.097
HH-02-02	0.432	0.937	0.221	0.123
HH-06-01	0.511	1.115	0.276	0.162
深秋红Late autumn red	0.480	0.897	0.191	0.114

Principal Component Analysis and Cluster Analysis of Amino Acids in Seabuckthorn Fruit

14种沙棘果实中氨基酸组成的主成分分析与综合评价

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Figures/Tables 8

References 33

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Metrics

	Asp	Thr	Ser	Glu	Gly	Ala	Cys	Val	Met	Iso	Leu	Tyr	Phe	His	Lys	Arg
Thr	0.641^*
Ser	0.477	0.924^**
Glu	0.385	0.851^**	0.918^**
Gly	0.515^*	0.900^**	0.910^**	0.954^**
Ala	0.595^*	0.781^**	0.797^**	0.820^**	0.897^**
Cys	0.438	0.365	0.365	0.199	0.153	-0.20
Val	0.624^*	0.899^**	0.867^**	0.921^**	0.973^**	0.905^**	0.164
Met	0.024	0.048	0.237	0.192	0.131	0.153	0.447	0.105
Iso	0.574^*	0.944^**	0.907^**	0.941^**	0.982^**	0.864^**	0.219	0.982^**	0.077
Leu	0.542^*	0.889^**	0.917^**	0.975^**	0.982^**	0.871^**	0.243	0.974^**	0.181	0.976^**
Tyr	0.576^*	0.876^**	0.846^**	0.868^**	0.915^**	0.856^**	0.056	0.900^**	-0.110	0.923^**	0.893^**
Phe	0.333	0.601^*	0.760^**	0.766^**	0.697^**	0.804^**	0.120	0.693^**	0.284	0.673^*	0.749^**	0.638^*
His	0.396	0.872^**	0.899^**	0.807^**	0.785^**	0.561^*	0.489^*	0.728^**	0.177	0.826^**	0.792^**	0.772^**	0.530^*
Lys	0.560^*	0.897^**	0.825^**	0.686^*	0.757^**	0.590^*	0.437	0.744^**	0.134	0.818^**	0.745^**	0.742^**	0.444	0.947^**
Arg	0.397	0.887^**	0.928^**	0.963^**	0.963^**	0.797^**	0.214	0.901^**	0.111	0.937^**	0.950^**	0.865^**	0.665^**	0.820^**	0.723^**
Pro	0.728^**	0.670^*	0.694^**	0.606^*	0.679^*	0.648^*	0.562^*	0.709^**	0.504	0.669^*	0.717^*	0.529^*	0.495	0.577^*	0.630^*	0.602

成分 Com- pon- ent	初始特征值Initial eigenvalue
成分 Com- pon- ent	特征值 Charac- teristic value	方差的贡献率 Contribution rate of variance (%)	累计方差贡献率 Cumulative variance contribution rate (%)
1	12.043	70.840	70.840
2	1.827	10.746	81.585
3	1.141	6.711	88.296

氨基酸 Amino acid	主成分1 Principal component 1		主成分2 Principal component 2		主成分3 Principal component 3
氨基酸 Amino acid	载荷 Load	系数 Coefficient	载荷 Load	系数 Coefficient	载荷 Load	系数 Coefficient
天冬氨酸Aspartic acid	0.597	0.034	0.443	0.257	0.073	-0.034
苏氨酸Threonine	0.946	0.078	0.218	0.136	-0.148	-0.175
丝氨酸Serine	0.952	0.077	0.098	0.016	0.082	0.026
谷氨酸Glutamicacid	0.653	0.085	-1.121	-0.127	0.081	0.064
甘氨酸Glycine	0.982	0.088	-0.089	-0.094	0.004	-0.002
丙氨酸Alanine	0.894	0.084	-0.270	-0.235	0.147	0.144
胱氨酸Cystine	0.242	-0.16	0.293	0.074	0.601	0.661
缬氨酸Valine	0.970	0.086	-0.055	-0.071	0.004	-0.008
甲硫氨酸Methionine	0.133	-0.017	0.853	0.499	0.242	-0.005
异亮氨酸Isoleucine	0.987	0.087	0.012	-0.014	-0.074	-0.082
亮氨酸Leucine	0.409	0.267	-0.047	-0.079	0.077	0.047
酪氨酸Tyrosine	0.932	0.090	-0.104	-0.060	-0.234	-0.186
苯丙氨酸Phenylalanine	0.746	0.067	-0.298	-0.287	0.371	0.327
组氨酸Histidine	0.843	0.063	0.348	0.216	-0.099	-0.157
赖氨酸Lysine	0.815	0.060	0.981	0.085	-0.157	-0.214
精氨酸Arginine	0.948	0.085	-0.063	-0.070	-0.028	-0.032
脯氨酸Proline	0.703	0.038	0.379	0.148	0.825	0.251

品种 Varieties	F₁	F₂	F₃	综合 Comprehensive	排名 Ranking
ANJR	-1.310	-0.698	0.079	-1.130	14
QH-03-02	2.003	-1.984	-0.491	1.327	2
AHG	-0.192	0.658	0.269	-0.053	9
QA-01-01	-0.220	0.532	-0.698	-0.165	10
CHNXY	0.066	1.131	1.127	0.325	6
拟QH-03-02	0.507	0.055	1.365	0.517	5
BT-06-04	1.865	0.428	-0.210	1.532	1
BT-08-02	0.710	1.399	0.505	0.742	3
HH-03-01	0.539	-1.585	-0.205	0.223	7
HK-01-01	0.675	0.079	-0.284	0.529	4
HK-04-01	-0.776	-0.181	-0.003	-0.645	11
HH-09-01	-2.119	0.408	0.186	-1.636	15
HH-02-02	-0.937	0.081	0.129	-0.732	12
HH-06-01	0.448	-0.609	-1.023	0.207	8
深秋红 Late autumn red	-1.259	0.219	-0.745	-1.040	13

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