Xinjiang Agricultural Sciences ›› 2023, Vol. 60 ›› Issue (10): 2574-2582.DOI: 10.6048/j.issn.1001-4330.2023.10.028
• Agricultural Equipment Engineering and Mechanization·Animal Husbandry Veterinarian • Previous Articles Next Articles
YAO Yingying1(), LI Jiahui1, LI Haiying1(), WU Yingping1, ZHAO Xiaoyu1, ZHOU Jun2, ZHAO Quanzhuang3, LI Zongfu3
Received:
2022-12-07
Online:
2023-10-20
Published:
2023-11-01
Correspondence author:
LI Haiying (1968-), female, born in Laiyang, Shandong Province, professor, doctoral supervisor, research field: animal nutrition utilization and efficient breading of poultry germplasm resources, (E-mail)Supported by:
姚莹莹1(), 李家辉1, 李海英1(), 吴盈萍1, 赵晓钰1, 周军2, 赵全庄3, 李宗福3
通讯作者:
李海英(1968 - ),女,山东莱阳人,教授,博士,博士生导师,研究方向为家禽种质资源与高效繁育,(E-mail)作者简介:
姚莹莹(1998 - ),女,河南许昌人,硕士研究生,研究方向为家禽生产学,(E-mail)2811388708@qq.com
基金资助:
CLC Number:
YAO Yingying, LI Jiahui, LI Haiying, WU Yingping, ZHAO Xiaoyu, ZHOU Jun, ZHAO Quanzhuang, LI Zongfu. Analysis of genetic diversity of Yemili chicken by microsatellite[J]. Xinjiang Agricultural Sciences, 2023, 60(10): 2574-2582.
姚莹莹, 李家辉, 李海英, 吴盈萍, 赵晓钰, 周军, 赵全庄, 李宗福. 也迷里鸡微卫星遗传多样性分析[J]. 新疆农业科学, 2023, 60(10): 2574-2582.
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座位 Locus | 染色体 Chrom | 引物序列(5'-3') Primer sequence(5' to 3') | 片段长度 Product length (bp) | 退火温度 Annealing temperature (℃) | |
---|---|---|---|---|---|
ADL0268 | 1 | F:CTCCACCCCTCTCAGAACTA | R:CAACTTCCCATCTACCTACT | 129~135 | 56 |
LEI0192 | 6 | F:TGCCAGAGCTTCAGTCTGT | R:GTCATTACTGTTATGTTTATTGC | 277~374 | 60 |
MCW0295 | 4 | F:ATCACTACAGAACACCCTCTC | R:TATGTATGCACGCAGATATCC | 110~118 | 60 |
MCW0216 | 13 | F:GGGTTTTACAGGATGGGACG | R:AGTTTCACTCCCAGGGCTCG | 163~173 | 58 |
MCW0248 | 4 | F:GTTGTTCAAAAGAAGATGCATG | R:TTGCATTAACTGGGCACTTTC | 237~245 | 55 |
MCW0183 | 7 | F:ATCCCAGTGTCGAGTATCCGA | R:TGAGATTTACTGGAGCCTGCC | 316~339 | 60 |
LEI0234 | 2 | F:ATGCATCAGATTGGTATTCAA | R:CGTGGCTGTGAACAAATATG | 237~325 | 55 |
MCW0111 | 1 | F:GCTCCATGTGAAGTGGTTTA | R:ATGTCCACTTGTCAATGATG | 118~122 | 55 |
MCW0067 | 10 | F:GCACTACTGTGTGCTGCAGTTT | R:GAGATGTAGTTGCCACATTCCGAC | 196~202 | 66 |
MCW0206 | 2 | F:CTTGACAGTGATGCATTAAATG | R:ACATCTAGAATTGACTGTTCAC | 248~256 | 60 |
LEI0166 | 3 | F:CTCCTGCCCTTAGCTACGCA | R:TATCCCCTGGCTGGGAGTTT | 364~375 | 58 |
ADL0278 | 8 | F:CCAGCAGTCTACCTTCCTAT | R:TGTCATCCAAGAACAGTGTG | 132~142 | 56 |
LEI0094 | 4 | F:GATCTCACCAGTATGAGCTGC | R:TCTCACACTGTAACACAGTGC | 271~302 | 58 |
MCW0330 | 17 | F:TGGACCTCATCAGTCTGACAG | R:AATGTTCTCATAGAGTTCCTGC | 277~307 | 56 |
MCW0222 | 3 | F:GCAGTTACATTGAAATGATTCC | R:TTCTCAAAACACCTAGAAGAC | 242~246 | 60 |
Tab.1 15 pairs of microsatellite primer sequence
座位 Locus | 染色体 Chrom | 引物序列(5'-3') Primer sequence(5' to 3') | 片段长度 Product length (bp) | 退火温度 Annealing temperature (℃) | |
---|---|---|---|---|---|
ADL0268 | 1 | F:CTCCACCCCTCTCAGAACTA | R:CAACTTCCCATCTACCTACT | 129~135 | 56 |
LEI0192 | 6 | F:TGCCAGAGCTTCAGTCTGT | R:GTCATTACTGTTATGTTTATTGC | 277~374 | 60 |
MCW0295 | 4 | F:ATCACTACAGAACACCCTCTC | R:TATGTATGCACGCAGATATCC | 110~118 | 60 |
MCW0216 | 13 | F:GGGTTTTACAGGATGGGACG | R:AGTTTCACTCCCAGGGCTCG | 163~173 | 58 |
MCW0248 | 4 | F:GTTGTTCAAAAGAAGATGCATG | R:TTGCATTAACTGGGCACTTTC | 237~245 | 55 |
MCW0183 | 7 | F:ATCCCAGTGTCGAGTATCCGA | R:TGAGATTTACTGGAGCCTGCC | 316~339 | 60 |
LEI0234 | 2 | F:ATGCATCAGATTGGTATTCAA | R:CGTGGCTGTGAACAAATATG | 237~325 | 55 |
MCW0111 | 1 | F:GCTCCATGTGAAGTGGTTTA | R:ATGTCCACTTGTCAATGATG | 118~122 | 55 |
MCW0067 | 10 | F:GCACTACTGTGTGCTGCAGTTT | R:GAGATGTAGTTGCCACATTCCGAC | 196~202 | 66 |
MCW0206 | 2 | F:CTTGACAGTGATGCATTAAATG | R:ACATCTAGAATTGACTGTTCAC | 248~256 | 60 |
LEI0166 | 3 | F:CTCCTGCCCTTAGCTACGCA | R:TATCCCCTGGCTGGGAGTTT | 364~375 | 58 |
ADL0278 | 8 | F:CCAGCAGTCTACCTTCCTAT | R:TGTCATCCAAGAACAGTGTG | 132~142 | 56 |
LEI0094 | 4 | F:GATCTCACCAGTATGAGCTGC | R:TCTCACACTGTAACACAGTGC | 271~302 | 58 |
MCW0330 | 17 | F:TGGACCTCATCAGTCTGACAG | R:AATGTTCTCATAGAGTTCCTGC | 277~307 | 56 |
MCW0222 | 3 | F:GCAGTTACATTGAAATGATTCC | R:TTCTCAAAACACCTAGAAGAC | 242~246 | 60 |
位点 Locus | 等位 基因数 Na | 有效等位 基因数 Ne | 观测 杂合度 Ho | 期望 杂合度 He | 多态信 息含量 PIC | 基因流 Nm | 群体内 近交系数 Fis | 总群体 近交系数 Fit | 群体间遗传 分化系数 Fst |
---|---|---|---|---|---|---|---|---|---|
ADL0268 | 5 | 3.852 | 0.817 | 0.740 | 0.695 | 19.612 | -0.152 | -0.137 | 0.013 |
ADL0278 | 7 | 3.219 | 0.735 | 0.689 | 0.640 | 9.891 | -0.099 | -0.072 | 0.025 |
LEI0094 | 11 | 3.994 | 0.767 | 0.750 | 0.713 | 19.529 | -0.007 | 0.006 | 0.013 |
LEI0166 | 4 | 2.885 | 0.658 | 0.653 | 0.579 | 6.192 | -0.038 | 0.002 | 0.039 |
LEI0192 | 13 | 3.075 | 0.425 | 0.675 | 0.653 | 23.16 | 0.385 | 0.392 | 0.011 |
LEI0234 | 13 | 7.485 | 0.658 | 0.866 | 0.854 | 7.99 | 0.235 | 0.258 | 0.030 |
MCW0067 | 4 | 3.115 | 0.690 | 0.679 | 0.612 | 18.56 | -0.013 | 0.001 | 0.013 |
MCW0111 | 5 | 2.897 | 0.625 | 0.655 | 0.606 | 14.77 | 0.037 | 0.053 | 0.017 |
MCW0183 | 10 | 4.769 | 0.592 | 0.790 | 0.764 | 6.638 | 0.200 | 0.229 | 0.036 |
MCW0206 | 5 | 3.240 | 0.692 | 0.691 | 0.644 | 12.466 | -0.012 | 0.008 | 0.020 |
MCW0216 | 7 | 3.947 | 0.642 | 0.747 | 0.706 | 29.689 | 0.141 | 0.149 | 0.008 |
MCW0222 | 4 | 3.096 | 0.605 | 0.677 | 0.627 | 7.413 | 0.042 | 0.073 | 0.033 |
MCW0248 | 4 | 2.191 | 0.550 | 0.544 | 0.439 | 16.358 | 0.043 | 0.057 | 0.015 |
MCW0295 | 6 | 3.935 | 0.720 | 0.746 | 0.709 | 15.122 | 0.037 | 0.053 | 0.016 |
MCW0330 | 4 | 3.616 | 0.725 | 0.723 | 0.671 | 18.972 | -0.035 | -0.022 | 0.013 |
平均值 Average | 6.800 | 3.688 | 0.660 | 0.708 | 0.661 | 15.091 | 0.051 | 0.070 | 0.020 |
Tab.2 Genetic diversity parameters of each locus
位点 Locus | 等位 基因数 Na | 有效等位 基因数 Ne | 观测 杂合度 Ho | 期望 杂合度 He | 多态信 息含量 PIC | 基因流 Nm | 群体内 近交系数 Fis | 总群体 近交系数 Fit | 群体间遗传 分化系数 Fst |
---|---|---|---|---|---|---|---|---|---|
ADL0268 | 5 | 3.852 | 0.817 | 0.740 | 0.695 | 19.612 | -0.152 | -0.137 | 0.013 |
ADL0278 | 7 | 3.219 | 0.735 | 0.689 | 0.640 | 9.891 | -0.099 | -0.072 | 0.025 |
LEI0094 | 11 | 3.994 | 0.767 | 0.750 | 0.713 | 19.529 | -0.007 | 0.006 | 0.013 |
LEI0166 | 4 | 2.885 | 0.658 | 0.653 | 0.579 | 6.192 | -0.038 | 0.002 | 0.039 |
LEI0192 | 13 | 3.075 | 0.425 | 0.675 | 0.653 | 23.16 | 0.385 | 0.392 | 0.011 |
LEI0234 | 13 | 7.485 | 0.658 | 0.866 | 0.854 | 7.99 | 0.235 | 0.258 | 0.030 |
MCW0067 | 4 | 3.115 | 0.690 | 0.679 | 0.612 | 18.56 | -0.013 | 0.001 | 0.013 |
MCW0111 | 5 | 2.897 | 0.625 | 0.655 | 0.606 | 14.77 | 0.037 | 0.053 | 0.017 |
MCW0183 | 10 | 4.769 | 0.592 | 0.790 | 0.764 | 6.638 | 0.200 | 0.229 | 0.036 |
MCW0206 | 5 | 3.240 | 0.692 | 0.691 | 0.644 | 12.466 | -0.012 | 0.008 | 0.020 |
MCW0216 | 7 | 3.947 | 0.642 | 0.747 | 0.706 | 29.689 | 0.141 | 0.149 | 0.008 |
MCW0222 | 4 | 3.096 | 0.605 | 0.677 | 0.627 | 7.413 | 0.042 | 0.073 | 0.033 |
MCW0248 | 4 | 2.191 | 0.550 | 0.544 | 0.439 | 16.358 | 0.043 | 0.057 | 0.015 |
MCW0295 | 6 | 3.935 | 0.720 | 0.746 | 0.709 | 15.122 | 0.037 | 0.053 | 0.016 |
MCW0330 | 4 | 3.616 | 0.725 | 0.723 | 0.671 | 18.972 | -0.035 | -0.022 | 0.013 |
平均值 Average | 6.800 | 3.688 | 0.660 | 0.708 | 0.661 | 15.091 | 0.051 | 0.070 | 0.020 |
位点 Locus | 1世代1 generation | 2世代2 generation | ||||
---|---|---|---|---|---|---|
Ho | He | Na | Ho | He | Na | |
ADL0268 | 0.902 | 0.719 | 4.5 | 0.787 | 0.748 | 5.0 |
ADL0278 | 0.746 | 0.692 | 6.0 | 0.766 | 0.683 | 6.5 |
LEI0094 | 0.736 | 0.734 | 7.5 | 0.753 | 0.745 | 7.5 |
LEI0166 | 0.591 | 0.586 | 3.0 | 0.709 | 0.666 | 3.5 |
LEI0192 | 0.350 | 0.633 | 7.5 | 0.455 | 0.677 | 10.0 |
LEI0234 | 0.639 | 0.862 | 10.5 | 0.650 | 0.824 | 10.5 |
MCW0067 | 0.699 | 0.663 | 3.5 | 0.645 | 0.665 | 3.5 |
MCW0111 | 0.615 | 0.599 | 4.0 | 0.617 | 0.680 | 5.0 |
MCW0183 | 0.578 | 0.725 | 7.5 | 0.631 | 0.786 | 8.5 |
MCW0206 | 0.626 | 0.665 | 4.0 | 0.752 | 0.697 | 4.5 |
MCW0216 | 0.578 | 0.731 | 5.5 | 0.696 | 0.753 | 6.0 |
MCW0222 | 0.663 | 0.606 | 4.0 | 0.565 | 0.676 | 4.0 |
MCW0248 | 0.436 | 0.549 | 3.5 | 0.582 | 0.514 | 2.5 |
MCW0295 | 0.586 | 0.725 | 5.5 | 0.812 | 0.727 | 6.0 |
MCW0330 | 0.710 | 0.718 | 4.0 | 0.772 | 0.714 | 4.0 |
平均值 Average | 0.630 | 0.681 | 5.367 | 0.680 | 0.704 | 5.8 |
Tab.3 The observed heterozygosity (Ho), expected heterozygosity (He) and number of alleles(Na) of different locus of two generations
位点 Locus | 1世代1 generation | 2世代2 generation | ||||
---|---|---|---|---|---|---|
Ho | He | Na | Ho | He | Na | |
ADL0268 | 0.902 | 0.719 | 4.5 | 0.787 | 0.748 | 5.0 |
ADL0278 | 0.746 | 0.692 | 6.0 | 0.766 | 0.683 | 6.5 |
LEI0094 | 0.736 | 0.734 | 7.5 | 0.753 | 0.745 | 7.5 |
LEI0166 | 0.591 | 0.586 | 3.0 | 0.709 | 0.666 | 3.5 |
LEI0192 | 0.350 | 0.633 | 7.5 | 0.455 | 0.677 | 10.0 |
LEI0234 | 0.639 | 0.862 | 10.5 | 0.650 | 0.824 | 10.5 |
MCW0067 | 0.699 | 0.663 | 3.5 | 0.645 | 0.665 | 3.5 |
MCW0111 | 0.615 | 0.599 | 4.0 | 0.617 | 0.680 | 5.0 |
MCW0183 | 0.578 | 0.725 | 7.5 | 0.631 | 0.786 | 8.5 |
MCW0206 | 0.626 | 0.665 | 4.0 | 0.752 | 0.697 | 4.5 |
MCW0216 | 0.578 | 0.731 | 5.5 | 0.696 | 0.753 | 6.0 |
MCW0222 | 0.663 | 0.606 | 4.0 | 0.565 | 0.676 | 4.0 |
MCW0248 | 0.436 | 0.549 | 3.5 | 0.582 | 0.514 | 2.5 |
MCW0295 | 0.586 | 0.725 | 5.5 | 0.812 | 0.727 | 6.0 |
MCW0330 | 0.710 | 0.718 | 4.0 | 0.772 | 0.714 | 4.0 |
平均值 Average | 0.630 | 0.681 | 5.367 | 0.680 | 0.704 | 5.8 |
群体 Groups | G1 | G2 | M1 | M2 |
---|---|---|---|---|
G1 | - | 0.922 | 0.936 | 0.929 |
G2 | 0.081 | - | 0.953 | 0.959 |
M1 | 0.066 | 0.048 | - | 0.936 |
M2 | 0.074 | 0.042 | 0.067 | - |
Tab.4 Nei's genetic distance and genetic similarity between the four groups
群体 Groups | G1 | G2 | M1 | M2 |
---|---|---|---|---|
G1 | - | 0.922 | 0.936 | 0.929 |
G2 | 0.081 | - | 0.953 | 0.959 |
M1 | 0.066 | 0.048 | - | 0.936 |
M2 | 0.074 | 0.042 | 0.067 | - |
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