番茄microRNA调控生长发育及逆境响应的研究进展

doi:10.6048/j.issn.1001-4330.2021.03.010

新疆农业科学 ›› 2021, Vol. 58 ›› Issue (3): 474-482.DOI: 10.6048/j.issn.1001-4330.2021.03.010

• 园艺特产·植物保护·畜牧兽医·微生物·农业生态环境 • 上一篇下一篇

番茄microRNA调控生长发育及逆境响应的研究进展

李宁^1,2, 王娟¹, 王柏柯¹, 戴麒¹, 黄少勇², 帕提古丽¹, 高杰², 余庆辉¹

1.新疆农业科学院园艺作物研究所,乌鲁木齐 830091;
2.新疆农业大学林学与园艺学院,乌鲁木齐 830042

收稿日期:2020-03-01 出版日期:2021-03-20 发布日期:2021-03-30
通信作者: 余庆辉(1970-),男,广东人,研究员,博士,研究方向为蔬菜遗传育种与栽培,(E-mail)yuqinghui98@sina.com
作者简介:李宁(1985-),男,新疆人,助理研究员,研究方向为番茄分子遗传育种,(E-mail)liningbio@163.com
基金资助:
国家重点研发计划(2017YFD0101906);新疆农业科学院重点项目前期预研专项(xjzdy-003);国家大宗蔬菜产业技术体系(CARS-23-G25)

Advances in Tomato (Solanum lycopersicum) MicroRNA Regulation of Growth and Adversity Response

LI Ning^1,2, WANG Juan¹, WANG Baike¹, DAI Qi¹, HUANG Shaoyong², Patiguli¹, GAO Jie², YU Qinghui¹

1. Institute of Horticultural Crops, Xinjiang Academy of Agricultural Sciences, Urumqi 830091, China;
2. College of Forestry & Horticulture, Xinjiang Agricultural University, Urumqi 830052, China

Received:2020-03-01 Online:2021-03-20 Published:2021-03-30
Correspondence author: YU Qinghui (1970-), male, native place: Dapu, Guangdong Province, Researcher, Postgraduate Tutor of Ph.D, research field: Vegetable Genetics and breeding, (E-mail)yuqinghui98@sina.com
Supported by:
the National R & D Program of China (2017YFD0101906);Pre-study of Key Project of Xinjiang Academy of Agricultural Sciences (xjzdy-003)and China Agriculture Research System (CARS-23-G25)

摘要/Abstract

摘要： 【目的】 回顾与总结番茄MicroRNA(miRNA)调控其生长发育及逆境响应的研究现状及进展,为番茄育种的应用提供理论和科学依据。【方法】 查阅国内外相关文献,汇总并对比分析文献数据。【结果】 miRNA是一类广泛存在于植物体内,位于基因组非编码区长约21～25个核苷酸的内源性非编码小分子RNA。其通过定向降解靶基因mRNA和抑制其翻译,对靶基因表达在转录后水平起调控作用。高通量测序的出现有助于植物miRNAs的数量呈指数增长,使得miRNAs相关数据库种类及数据量日渐丰富。番茄诸多生物学过程都受到miRNA的调控,包括植株形态、器官发育、生长发育以及响应干旱、盐、温度和生物胁迫等方面。【结论】 miRNAs在番茄生长发育和胁迫应答等方面起重要作用,围绕miRNAs及其靶基因对番茄的调控机制,定向改变番茄果实品质及生长周期。

关键词: MicroRNAs; 番茄; 生长发育; 逆境胁迫

Abstract: 【Objective】 This paper reviews and summarizes the research status and progress of the regulation of tomato miRNAs on its growth and development and response to adversity, so as to provide theoretical and scientific basis for the application of tomato breeding.【Methods】 Consult the relevant literature at home and abroad, summarize and compare the literature data.【Result】 MiRNA is a kind of endogenous noncoding microRNA, which widely exists in plants. It is located in the noncoding region of genome and has about 21-25 nucleotides. It regulates target gene expression at the post-transcriptional level by directional degradation of target gene mRNA and inhibition of its translation. The emergence of high-throughput sequencing is conducive to the exponential growth of the number of plant miRNAs, which makes the types and data volume of miRNAs related databases increasingly rich. Recent research results show that many biological processes of tomato are regulated by miRNA, including plant morphology, organ development, growth and development, and response to drought, salt, temperature, and biological stress.【Conclusion】 MiRNAs play a crucial role in tomato growth and development, and stress response. The research should focus on the regulatory mechanism of miRNAs and their target genes on tomato. In the future, it is expected to change the quality and growth cycle of tomato fruits in a targeted manner, and provide new ideas and methods for tomato resistance to adversity.

Key words: microRNAs; tomato; growth and development; adversity stress

中图分类号:

S641.2

李宁, 王娟, 王柏柯, 戴麒, 黄少勇, 帕提古丽, 高杰, 余庆辉. 番茄microRNA调控生长发育及逆境响应的研究进展[J]. 新疆农业科学, 2021, 58(3): 474-482.

LI Ning, WANG Juan, WANG Baike, DAI Qi, HUANG Shaoyong, Patiguli, GAO Jie, YU Qinghui. Advances in Tomato (Solanum lycopersicum) MicroRNA Regulation of Growth and Adversity Response[J]. Xinjiang Agricultural Sciences, 2021, 58(3): 474-482.

参考文献

[1] Djami-tchatchou A T, Sanan-mishra N, Ntushelo K, et al.Functional roles of microRNAs in agronomically important plants-potential as targets for crop improvement and protection [J].Frontiers in Plant Science, 2017, 8: 378.
[2] Damodharan S, Zhao D, Arazi T.A common miRNA160-based mechanism regulates ovary patterning, floral organ abscission and lamina outgrowth in tomato [J].The Plant Journal, 2016, 86 (6): 458-471.
[3] Zhang B, Wang Q.MicroRNA-based biotechnology for plant improvement[J].Journal of Cellular Physiology, 2015, 230 (1): 1-15.
[4] Iovieno P, Punzo P, Guida G, et al.Transcriptomic changes drive physiological responses to progressive drought stress and rehydration in tomato[J].Frontiers in Plant Science, 2016, 7: 371.
[5] Capel C, Del-carmen A F, Alba J M, et al.Wide-genome QTL mapping of fruit quality traits in a tomato RIL population derived from the wild-relative species Solanum pimpinellifolium L[J].Theoretical and Applied Genetics, 2015, 128 (10): 2 019-2 035.
[6] Kumar R, Khurana A.Functional genomics of tomato: opportunities and challenges in post-genome NGS era [J].Journal of Biosciences, 2014, 39 (5): 917-929.
[7] ArribAs-hern?ndez L, Marchais A, Poulsen C, et al.The slicer activity of Argonaute1 is required specifically for the phasing, not production, of trans-acting short interfering RNAs in Arabidopsis [J].The Plant Cell, 2016, 28 (7): 1 563-1 580.
[8] Iki T.Messages on small RNA duplexes in plants [J].Journal of Plant Research, 2017, 130 (1): 7-16.
[9] Ebert M S, Sharp P A.Roles for microRNAs in conferring robustness to biological processes [J].Cell, 2012, 149 (3): 515-524.
[10] Pantaleo V, Szittya G, Moxon S, et al.Identification of grapevine microRNAs and their targets using high‐throughput sequencing and degradome analysis[J].The Plant Journal, 2010, 62 (6): 960-976.
[11] Kim D, Sung Y M, Park J, et al.General rules for functional microRNA targeting [J].Nature Genetics, 2016, 48 (12): 1 517.
[12] Xie M, Zhang S, Yu B.MicroRNA biogenesis, degradation and activity in plants[J].Cellular and Molecular Life Sciences, 2015, 72 (1): 87-99
[13] Djami-tchatchou A T, Dubery I A.Lipopolysaccharide perception leads to dynamic alterations in the microtranscriptome of Arabidopsis thaliana cells and leaf tissues [J].BMC Plant Biology, 2015, 15 (1): 79.
[14] Chen X.Small RNAs and their roles in plant development [J]. Annual Review of Cell and Developmental, 2009, 25: 21-44.
[15] Sunkar R, LI Y F, Jagadeeswaran G.Functions of microRNAs in plant stress responses [J].Trends in Plant Science, 2012, 17 (4): 196-203.
[16] Zuo J H, Wang Y X, Liu H P, et al.MicroRNAs in tomato plants [J].Science China Life Sciences, 2011, 54 (7): 599-605.
[17] Jeong D H.Functional diversity of microRNA variants in plants [J].Journal of Plant Biology, 2016, 59 (4): 303-310.
[18] Zhao M, Meyers B C, Cai C, et al.Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in Soybean[J].Plant Cell, 2015, 27 (3): 546-562.
[19] Brodersen P, Sakvarelidze-achard L, Bruun-rasmussen M, et al.Widespread translational inhibition by plant miRNAs and siRNAs [J].Science, 2008, 320 (5 880): 1 185-1 190.
[20] Shriram V, Kumar V, Devarumath R M, et al.MicroRNAs as potential targets for abiotic stress tolerance in plants [J].Frontiers in Plant Science, 2016, 7: 817.
[21] Sun F, Guo G, DU J, et al.Whole-genome discovery of miRNAs and their targets in wheat (Triticum aestivum L.) [J].BMC Plant Biology, 2014, 14 (1): 142.
[22] Hou Y, Jiang F, Zheng X, et al. Responsive microRNAs in the root of wild tomato (S.habrochaites) [J].BMC Plant Biology, 2019, 19 (1): 100.
[23] Jodder J, Basak S, Das R, et al.Coherent regulation of miR167a biogenesis and expression of auxin signaling pathway genes during bacterial stress in tomato[J].Physiological and Molecular Plant Pathology, 2017, 100: 97-105.
[24] Liu X, Dong X, Liu Z, et al.Repression of ARF10 by microRNA160 plays an important role in the mediation of leaf water loss [J].Plant Molecular Biology, 2016, 92 (3): 313-336.
[25] Omidvar V, Mohorianu I, Dalmay T, et al.Transcriptional regulation of male-sterility in 7B-1 male-sterile tomato mutant[J].Plos One, 2017, 12 (2): e0170715.
[26] Omidvar V, Mohorianu I, Dalmay T, et al.Identification of miRNAs with potential roles in regulation of anther development and male-sterility in 7B-1 male-sterile tomato mutant[J].BMC Genomics, 2015, 16 (1): 878.
[27] Da-silva E M, Silva G F F, Bidoia D B, et al.MicroRNA159‐targeted Slgamyb transcription factors are required for fruit set in tomato[J].The Plant Journal, 2017, 92 (1): 95-109.
[28] Liu X, Xu T, Dong X, et al.The role of gibberellins and auxin on the tomato cell layers in pericarp via the expression of ARFs regulated by miRNAs in fruit set [J].Acta Physiologiae Plantarum, 2016, 38 (3): 77.
[29] Rosas C F, Ruiz S Y, Cano R R, et al.Effect of constitutive miR164 expression on plant morphology and fruit development in Arabidopsis and tomato[J]. Agronomy, 2017, 7 (3): 48.
[30] Wang Y, Zou W, Xiao Y, et al.MicroRNA1917 targets CTR4 splice variants to regulate ethylene responses in tomato[J].Journal of Experimental Botany, 2018, 69 (5): 1 011-1 025.
[31] Chen W, Kong J, Lai T, et al.Tuning LeSPL-CNR expression by SlymiR157 affects tomato fruit ripening [J].Scientific Reports, 2015, 5: 7 852.
[32] Gao C, Ju Z, Cao D, et al.MicroRNA profiling analysis throughout tomato fruit development and ripening reveals potential regulatory role of RIN on microRNAs accumulation[J].Plant Biotechnology Journal, 2015, 13 (3): 370-382.
[33] Xie F, Stewart Jr C N, Taki F A, et al.High-throughput deep sequencing shows that microRNAs play important roles in switch grass responses to drought and salinity stress[J].Plant Biotechnology Journal, 2014, 12 (3): 354-366.
[34] López-galiano M J, Sentandreu V, Martínez-ramírez A C, et al.Identification of stress associated microRNAs in Solanum lycopersicum by High-Throughput Sequencing [J].Genes, 2019, 10 (6): 475.
[35] Liu M, Yu H, Zhao G, et al.Profiling of drought-responsive microRNA and mRNA in tomato using high-throughput sequencing[J].BMC Genomics, 2017, 18 (1): 481.
[36] Ma X, Xin Z, Wang Z, et al.Identification and comparative analysis of differentially expressed miRNAs in leaves of two wheat (Triticum aestivum L.) genotypes during dehydration stress [J].BMC Plant Biology, 2015, 15 (1): 21.
[37] Liu M, Yu H, Zhao G, et al.Identification of drought-responsive microRNAs in tomato using high-throughput sequencing[J].Functional & Integrative Genomics, 2018, 18 (1): 67-78.
[38] Candar-cakir B, Arican E, Zhang B.Small RNA and degradome deep sequencing reveals drought-and tissue-specific microRNAs and their important roles in drought-sensitive and drought-tolerant tomato genotypes [J].Plant Biotechnology Journal, 2016, 14 (8): 1 727-1 746.
[39] Chen L, Meng J, Luan Y.MiR1916 plays a role as a negative regulator in drought stress resistance in tomato and tobacco [J].Biochemical and Biophysical Research Communications, 2019, 508 (2): 597-602.
[40] Zhang B.MicroRNA: a new target for improving plant tolerance to abiotic stress [J].Journal of Experimental Botany, 2015, 66 (7): 1 749-1 761.
[41] Zhao G, Yu H, Liu M, et al.Identification of salt-stress responsive microRNAs from Solanum lycopersicum and Solanum pimpinellifolium [J].Plant Growth Regulation, 2017, 83 (1): 129-140.
[42] Jodder J, Das R, Sarkar D, et al.Distinct transcriptional and processing regulations control miR167a level in tomato during stress [J].RNA Biology, 2018, 15 (1): 130-143.
[43] Pan C, Ye L, Zheng Y, et al.Identification and expression profiling of microRNAs involved in the stigma exertion under high-temperature stress in tomato [J].BMC Genomics, 2017, 18 (1): 843.
[44] Zhou R, Wang Q, Jiang F, et al.Identification of miRNAs and their targets in wild tomato at moderately and acutely elevated temperatures by high-throughput sequencing and degradome analysis [J].Scientific Reports, 2016, 6: 33 777.
[45] Chen H, Chen X, Chen D, et al.A comparison of the low temperature transcriptomes of two tomato genotypes that differ in freezing tolerance: Solanum lycopersicum and Solanum habrochaites[J].BMC Plant Biology, 2015, 15 (1): 132.
[46] Shi X, Jiang F, Wen J, et al.MicroRNA319 family members play an important role in Solanum habrochaites and S.lycopersicum responses to chilling and heat stresses [J].Biologia Plantarum, 2019, 63: 200-209.
[47] Shi X, Jiang F, Wen J, et al.Overexpression of Solanum habrochaites microRNA319d (sha-miR319d) confers chilling and heat stress tolerance in tomato (S.lycopersicum)[J].BMC Plant Biology, 2019, 19 (1): 214.
[48] Devries S, Kukuk A, Vondahlen J K, et al.Expression profiling across wild and cultivated tomatoes supports the relevance of early miR482/2118 suppression for Phytophthora resistance[J].Proceedings of the Royal Society B: Biological Sciences, 2018, 285 (1873): 20172560.
[49] Jiang N, Meng J, Cui J, et al.Function identification of miR482b, a negative regulator during tomato resistance to Phytophthora infestans [J].Horticulture Research, 2018, 5 (1): 9.
[50] Chen L, Meng J, He X L, et al.Solanum lycopersicum microRNA1916 targets multiple target genes and negatively regulates the immune response in tomato[J].Plant, Cell & Environment, 2019, 42 (4): 1 393-1 407.
[51] Luan Y, Cui J, Li J, et al.Effective enhancement of resistance to Phytophthora infestans by overexpression of miR172a and b in Solanum lycopersicum [J].Planta, 2018, 247 (1): 127-138.
[52] Luan Y, Cui J, Wang W, et al.MiR1918 enhances tomato sensitivity to Phytophthora infestans infection [J].Scientific Reports, 2016, 6: 35 858.
[53] Zhao M, Ji H M, Gao Y, et al.An integrated analysis of mRNA and sRNA transcriptional profiles in tomato root: Insights on tomato wilt disease [J].Plos One, 2018, 13(11):e0206765.
[54] Abdelkhalek A, Sanan-mishra N.Differential expression profiles of tomato mirnas induced by Tobacco Mosaic Virus [J].Journal of Agricultural Science and Technology, 2019, 21(2): 475-485.
[55] Wang K T, Su X M, Cui X, et al.identification and characterization of microRNA during Bemisia tabaci infestations in Solanum lycopersicum and Solanum habrochaites [J].Horticultural Plant Journal, 2018, 4(2): 62-72.
[56] Kumar R.Role of miRNAs in biotic and abiotic stress responses in crop plants [J].Applied Biochemistry and Biotechnology, 2014, 174 (1): 93-115.
[57] Chen X, Mangala L S, Rodriguez-aguayo C, et al.RNA interference-based therapy and its delivery systems[J].Cancer and Metastasis Reviews, 2018, 37 (1): 107-124.

番茄microRNA调控生长发育及逆境响应的研究进展

Advances in Tomato (Solanum lycopersicum) MicroRNA Regulation of Growth and Adversity Response

PDF下载

可视化

摘要/Abstract

引用本文

使用本文

参考文献

相关文章 15

编辑推荐

Metrics

[1]	陈传信, 张永强, 聂石辉, 孔德鹏, 赛力汗·赛, 徐其江, 雷钧杰. 生物质炭施用量对滴灌冬小麦生长发育和产量的影响[J]. 新疆农业科学, 2023, 60(9): 2146-2151.
[2]	宋冰梅, 姜岩, 陈鑫, 张宇, 程宛楠, 潘洪生. 新型转基因高产棉花萌发期和苗期耐盐性与耐碱性评价[J]. 新疆农业科学, 2023, 60(9): 2239-2247.
[3]	王丹丹, 李燕, 张庆银, 李世东, 庞永超, 马琨芝, 马龙, 牛瑞生, 钟增明, 齐连芬, 师建华. 不同微生物菌处理对番茄土壤微生物多样性的影响[J]. 新疆农业科学, 2023, 60(9): 2248-2257.
[4]	蒲敏, 阮向阳, 肖乐乐, 索常凯, 陈国永, 冶军, 高波. 枸溶性钙镁肥对加工番茄钙、镁吸收及品质的影响[J]. 新疆农业科学, 2023, 60(8): 1987-1995.
[5]	魏迎凤, 张全成, 查慧, 王小丽, 王俊刚. 二甲戊灵对龙葵苗期主要生长发育和生理指标的影响[J]. 新疆农业科学, 2023, 60(8): 2013-2021.
[6]	肖林刚, 马艳, 宋兵伟, 焦锐斌, 邢剑飞. 温室膜下微喷灌溉技术研究进展[J]. 新疆农业科学, 2023, 60(7): 1731-1740.
[7]	刘江娜, 张西英, 李荣霞, 张小伟, 白云凤, 张爱萍. 番茄SlLCY-B2及其启动子的分子特征和sgRNA分析[J]. 新疆农业科学, 2023, 60(6): 1460-1465.
[8]	李家辉, 赵晓钰, 李海英, 张俐华, 张杰, 魏彦, 周军, 赵全庄, 李宗福. 也迷离鸡生长发育规律及体重体尺的相关性分析[J]. 新疆农业科学, 2023, 60(5): 1281-1291.
[9]	彭增莹, 张巨松, 卡地力亚·阿不都克力木, 贺宏伟, 刘群, 郭仁松. 氮肥与缩节胺对机采棉生长发育及氮素分布的影响[J]. 新疆农业科学, 2023, 60(4): 781-789.
[10]	杜红艳, 庞胜群, 马海翔, 吉雪花. 加工番茄早熟突变体农艺性状相关性及通径分析[J]. 新疆农业科学, 2023, 60(4): 943-950.
[11]	朱普生, 刘慧英, 曹泽, 刘凯歌, 李雪珍. 外源GSNO对NaCl胁迫下番茄幼苗生长及光合特性的影响[J]. 新疆农业科学, 2023, 60(2): 351-358.
[12]	周小云, 张军高, 周佳玉, 李进, 秦冰霜, 梁晶, 龚静云, 雷斌. 三种植物提取物对棉花种子发芽及幼苗生长影响[J]. 新疆农业科学, 2023, 60(12): 2902-2910.
[13]	曾军, 武磊, 高雁, 张卓, 林青, 刘建伟, 杨红梅, 霍向东, 史应武. 光合细菌叶面肥喷施对设施有机番茄产量和品质的影响[J]. 新疆农业科学, 2023, 60(12): 3018-3024.
[14]	刘升学, 李思琪, 王晓东, 杨德松. 番茄早疫病菌dsRNA多样性分析[J]. 新疆农业科学, 2023, 60(12): 3057-3064.
[15]	孙明辉, 阿依努尔·卡依木, 翟梦华, 代健敏, 张巨松. 雹灾重播条件下不同棉花品种生长发育、产量及品质的差异比较[J]. 新疆农业科学, 2023, 60(11): 2667-2673.