Xinjiang Agricultural Sciences ›› 2022, Vol. 59 ›› Issue (9): 2217-2223.DOI: 10.6048/j.issn.1001-4330.2022.09.016
• Horticultural Special Local Products·Storage and Preservation Processing·Soil Fertilizer·Water Saving Irrigation·Prataculture·Food Process Engineering • Previous Articles Next Articles
ZHOU Bo1(), REN Hailong1,2, ZHANG Yan3, GAO Qiang3, XU Lin3, ZOU Jiwen2()
Received:
2021-12-06
Online:
2022-09-20
Published:
2023-01-16
Correspondence author:
ZOU Jiwen
Supported by:
周勃1(), 任海龙1,2, 张龑3, 高强3, 徐麟3, 邹集文2()
通讯作者:
邹集文
作者简介:
周勃(1979-),男,甘肃临洮人,高级农艺师,硕士,研究方向为作物土肥水技术,(E-mail)82570049@qq.com
基金资助:
CLC Number:
ZHOU Bo, REN Hailong, ZHANG Yan, GAO Qiang, XU Lin, ZOU Jiwen. Characteristics and Analysis of Simple Sequence Repeats(SSR) in Medicago polymorpha and Main Medicagospecies genome[J]. Xinjiang Agricultural Sciences, 2022, 59(9): 2217-2223.
周勃, 任海龙, 张龑, 高强, 徐麟, 邹集文. 金花菜与苜蓿属主要物种基因组SSR分布特征的比较分析[J]. 新疆农业科学, 2022, 59(9): 2217-2223.
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URL: http://www.xjnykx.com/EN/10.6048/j.issn.1001-4330.2022.09.016
物种 Species | 品种 Varieties | 测序平台 Sequencing platform | 基因组大小 Genome size | 染色体数 Number of chromosomes | 发表时间 Published time |
---|---|---|---|---|---|
金花菜 Medicago polymorpha | Huaiyang Jinhuacai | PacBio、Illumina、Hi-C | 457.53 Mb | 2N=2X=14 | 2021年 |
蒺藜苜蓿 Medicago truncatula | Jemalong A17 | PacBio、BioNano | 430.01 Mb | 2N=2X=16 | 2018年 |
紫花苜蓿 Medicago sativa | Zhongmu No.1 | PacBio、Bionano、Hi-C | 817.12 Mb | 2N=4X=32 | 2020年 |
Table 1 Genome sequencing information of three Medicago species
物种 Species | 品种 Varieties | 测序平台 Sequencing platform | 基因组大小 Genome size | 染色体数 Number of chromosomes | 发表时间 Published time |
---|---|---|---|---|---|
金花菜 Medicago polymorpha | Huaiyang Jinhuacai | PacBio、Illumina、Hi-C | 457.53 Mb | 2N=2X=14 | 2021年 |
蒺藜苜蓿 Medicago truncatula | Jemalong A17 | PacBio、BioNano | 430.01 Mb | 2N=2X=16 | 2018年 |
紫花苜蓿 Medicago sativa | Zhongmu No.1 | PacBio、Bionano、Hi-C | 817.12 Mb | 2N=4X=32 | 2020年 |
物种 Species | SSR总长度 Total lengh of SSR/bp | SSR数量 Number of SSR | SSR分布密度 Density of SSR/Mb | SSR平均长度 Average lengh of SSR/bp |
---|---|---|---|---|
金花菜 Medicago polymorpha | 3 611 698 | 195 753 | 428 | 18 |
蒺藜苜蓿 Medicago truncatula | 3 657 503 | 242 434 | 564 | 15 |
紫花苜蓿 Medicago sativa | 6 307 211 | 390 496 | 478 | 16 |
Table 2 Distribution of SSR in three Medicago species
物种 Species | SSR总长度 Total lengh of SSR/bp | SSR数量 Number of SSR | SSR分布密度 Density of SSR/Mb | SSR平均长度 Average lengh of SSR/bp |
---|---|---|---|---|
金花菜 Medicago polymorpha | 3 611 698 | 195 753 | 428 | 18 |
蒺藜苜蓿 Medicago truncatula | 3 657 503 | 242 434 | 564 | 15 |
紫花苜蓿 Medicago sativa | 6 307 211 | 390 496 | 478 | 16 |
物种 Species | 重复单元Repeat type | |||||
---|---|---|---|---|---|---|
单核苷酸 Mononucleotide | 二核苷酸 Dinucleotide | 三核苷酸 Trinucleotide | 四核苷酸 Tetranucleotide | 五核苷酸 Pentanucleotide | 六核苷酸 Hexanucleotide | |
金花菜 Medicago polymorpha | 147 953 (75.58%) | 29 975 (15.31%) | 15 548 (7.94%) | 1 670 (0.85%) | 390 (0.20%) | 217 (0.11%) |
蒺藜苜蓿 Medicago truncatula | 188 141 (77.61%) | 35 691 (14.72%) | 16 354 (6.75%) | 1 692 (0.70%) | 355 (0.15%) | 201 (0.08%) |
紫花苜蓿 Medicago sativa | 281 075 (71.98%) | 70 628 (18.09%) | 31 793 (8.14%) | 4 845 (1.24%) | 985 (0.25%) | 1 170 (0.30%) |
Table 3 Number and proportion of different SSR repeat types in three Medicago species
物种 Species | 重复单元Repeat type | |||||
---|---|---|---|---|---|---|
单核苷酸 Mononucleotide | 二核苷酸 Dinucleotide | 三核苷酸 Trinucleotide | 四核苷酸 Tetranucleotide | 五核苷酸 Pentanucleotide | 六核苷酸 Hexanucleotide | |
金花菜 Medicago polymorpha | 147 953 (75.58%) | 29 975 (15.31%) | 15 548 (7.94%) | 1 670 (0.85%) | 390 (0.20%) | 217 (0.11%) |
蒺藜苜蓿 Medicago truncatula | 188 141 (77.61%) | 35 691 (14.72%) | 16 354 (6.75%) | 1 692 (0.70%) | 355 (0.15%) | 201 (0.08%) |
紫花苜蓿 Medicago sativa | 281 075 (71.98%) | 70 628 (18.09%) | 31 793 (8.14%) | 4 845 (1.24%) | 985 (0.25%) | 1 170 (0.30%) |
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