

Xinjiang Agricultural Sciences ›› 2025, Vol. 62 ›› Issue (5): 1121-1130.DOI: 10.6048/j.issn.1001-4330.2025.05.009
• Crop Genetics and Breeding·Cultivation Physiology·Physiology and Biochemistry • Previous Articles Next Articles
WANG Yaling(
), JIANG Yinghong, SUN Hui, LIU Yi(
)
Received:2024-10-07
Online:2025-05-20
Published:2025-07-09
Correspondence author:
LIU Yi
Supported by:通讯作者:
刘易
作者简介:王亚玲(1994-),女,新疆乌鲁木齐人,助理研究员,博士研究生,研究方向为马铃薯抗逆育种,(E-mail)yalingwangx@163.com
基金资助:CLC Number:
WANG Yaling, JIANG Yinghong, SUN Hui, LIU Yi. Comparative transcriptome analysis between two potato varieties with different salt-tolerance and further identification of potato salt-tolerance genes[J]. Xinjiang Agricultural Sciences, 2025, 62(5): 1121-1130.
王亚玲, 江应红, 孙慧, 刘易. 不同马铃薯耐盐性转录组比较及耐盐基因的挖掘[J]. 新疆农业科学, 2025, 62(5): 1121-1130.
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| 基因号 Gene ID | 上游引物 Up-stream primer | 下游引物 Down-stream primer |
|---|---|---|
| PGSC0003DMT400016742 | CTGTTGTGGCCGTCCTAACT | ATCAGGCTTGTGGTCAGTGG |
| PGSC0003DMT400018004 | ATGGAAGAGATGTTTCCAGCACT | GCAAGCTAGTCGTATTCGGG |
| PGSC0003DMT400027196 | GTGCGACTTCGGTATGTGGA | AGCCATGGCCATCGTAAACA |
| PGSC0003DMT400029264 | AAGTCGGTGGAGACTTATGCTT | AGCACGGATTAAAGCCCTC |
| StEF1a | GATGTTGTGCCAAAGGATGT | AACTTGTGGTCAATGCGAGA |
Tab.1 qRT-PCR primers
| 基因号 Gene ID | 上游引物 Up-stream primer | 下游引物 Down-stream primer |
|---|---|---|
| PGSC0003DMT400016742 | CTGTTGTGGCCGTCCTAACT | ATCAGGCTTGTGGTCAGTGG |
| PGSC0003DMT400018004 | ATGGAAGAGATGTTTCCAGCACT | GCAAGCTAGTCGTATTCGGG |
| PGSC0003DMT400027196 | GTGCGACTTCGGTATGTGGA | AGCCATGGCCATCGTAAACA |
| PGSC0003DMT400029264 | AAGTCGGTGGAGACTTATGCTT | AGCACGGATTAAAGCCCTC |
| StEF1a | GATGTTGTGCCAAAGGATGT | AACTTGTGGTCAATGCGAGA |
Fig.1 (A) Changes of salt stress with different NaCl concentrations on the growth of potato seedlings in Jinshu 16 and Jizhangshu 12. (B) The malondialdehyde content of Jinshu 16 and Jizhangshu 12 were measured at different NaCl concentrations (0%, 0.5%, 1%, 1.5%) and stress times (0, 4, 8, 12 days)
| 样品 Sample | 有效 序列 Clean reads | 有效 碱基(G) Clean bases | Q30 含量 Q30 content (%) | GC 含量 GC content (%) | 比对效率 Mapped reads ratio (%) |
|---|---|---|---|---|---|
| JC | 42058489 | 6.27 | 93.89 | 43.89 | 80.01 |
| JT | 41683414 | 6.26 | 93.67 | 43.98 | 85.13 |
| ZC | 41728022 | 6.22 | 93.62 | 43.36 | 87.58 |
| ZT | 41015686 | 6.12 | 93.71 | 43.95 | 87.72 |
Tab.2 Statistics and assessment of sequencing data
| 样品 Sample | 有效 序列 Clean reads | 有效 碱基(G) Clean bases | Q30 含量 Q30 content (%) | GC 含量 GC content (%) | 比对效率 Mapped reads ratio (%) |
|---|---|---|---|---|---|
| JC | 42058489 | 6.27 | 93.89 | 43.89 | 80.01 |
| JT | 41683414 | 6.26 | 93.67 | 43.98 | 85.13 |
| ZC | 41728022 | 6.22 | 93.62 | 43.36 | 87.58 |
| ZT | 41015686 | 6.12 | 93.71 | 43.95 | 87.72 |
Fig.2 Analysis of differentially expressed genes between salt tolerant Jinshu16 and salt sensitive Jizhangshu 12 groups Notes:(A) Differential expression gene statistics; (B) Differential expression gene Venn diagram
| 名称 Name | 基因ID Gene ID | 表达模式 Expression pattern |
|---|---|---|
| 蛋白激酶 Protein kinase | PGSC0003DMG400003790 PGSC0003DMG400009843 PGSC0003DMG400014064 PGSC0003DMG400015666 PGSC0003DMG400017943 PGSC0003DMG400018840 PGSC0003DMG400019720 PGSC0003DMG400021993 PGSC0003DMG401019681 PGSC0003DMG402029906 | 下调 Down |
| PP2C Protein phosphatase 2C | PGSC0003DMG400002573 PGSC0003DMG400009112 PGSC0003DMG400016742 PGSC0003DMG400018004 PGSC0003DMG400019604 PGSC0003DMG400027196 PGSC0003DMG400030332 | 上调UP |
| 生长素转运蛋白 Auxin transporter- like protein 3 | PGSC0003DMG400006550 | UP上调 |
| ABF ABRE binding factor | PGSC0003DMG400008011 | UP上调 |
| 脱落酸受体 Abscisic acid receptor protein | PGSC0003DMG400011033 PGSC0003DMG400015897 PGSC0003DMG400023949 | DOWN下调 |
| 脱落酸-不敏感蛋白 ABSCISIC ACID- INSENSITIVE 5- like protein 4 | PGSC0003DMG400025889 | UP上调 |
| 生长素应答蛋白 Auxin-responsive protein | PGSC0003DMG400026010 PGSC0003DMG402002635 | UP上调 UP上调 |
| 吲哚-3-乙酸酰 胺合成酶 Indole-3-acetic acid-amido synthetase | PGSC0003DMG401018368 PGSC0003DMG402018368 | DOWN下调 DOWN下调 |
| MYC4转录因子 Transcription factor MYC4 | PGSC0003DMG400005525 PGSC0003DMG401010822 PGSC0003DMG402010822 | DOWN下调 |
Tab.3 Analysis of DEGs involved in plant hormone signal transduction pathway under salt stress in Jinshu16
| 名称 Name | 基因ID Gene ID | 表达模式 Expression pattern |
|---|---|---|
| 蛋白激酶 Protein kinase | PGSC0003DMG400003790 PGSC0003DMG400009843 PGSC0003DMG400014064 PGSC0003DMG400015666 PGSC0003DMG400017943 PGSC0003DMG400018840 PGSC0003DMG400019720 PGSC0003DMG400021993 PGSC0003DMG401019681 PGSC0003DMG402029906 | 下调 Down |
| PP2C Protein phosphatase 2C | PGSC0003DMG400002573 PGSC0003DMG400009112 PGSC0003DMG400016742 PGSC0003DMG400018004 PGSC0003DMG400019604 PGSC0003DMG400027196 PGSC0003DMG400030332 | 上调UP |
| 生长素转运蛋白 Auxin transporter- like protein 3 | PGSC0003DMG400006550 | UP上调 |
| ABF ABRE binding factor | PGSC0003DMG400008011 | UP上调 |
| 脱落酸受体 Abscisic acid receptor protein | PGSC0003DMG400011033 PGSC0003DMG400015897 PGSC0003DMG400023949 | DOWN下调 |
| 脱落酸-不敏感蛋白 ABSCISIC ACID- INSENSITIVE 5- like protein 4 | PGSC0003DMG400025889 | UP上调 |
| 生长素应答蛋白 Auxin-responsive protein | PGSC0003DMG400026010 PGSC0003DMG402002635 | UP上调 UP上调 |
| 吲哚-3-乙酸酰 胺合成酶 Indole-3-acetic acid-amido synthetase | PGSC0003DMG401018368 PGSC0003DMG402018368 | DOWN下调 DOWN下调 |
| MYC4转录因子 Transcription factor MYC4 | PGSC0003DMG400005525 PGSC0003DMG401010822 PGSC0003DMG402010822 | DOWN下调 |
| 名称 Name | 基因ID Gene ID | 表达模式 Expression pattern |
|---|---|---|
| 查尔酮合成酶 Chalcone synthase G | PGSC0003DMG400008633 PGSC0003DMG400019110 PGSC0003DMG400029620 | UP上调 UP上调 DOWN下调 |
| 乙酰辅酶A苄醇 乙酰转移酶 Acetyl-CoA-benzylalcohol acetyltransferase-like | PGSC0003DMG400029256 PGSC0003DMG400029262 | DOWN下调 |
| 黄烷酮3-羟化酶 Flavanone 3-hydroxylase | PGSC0003DMG400003563 PGSC0003DMG400011929 | DOWN下调 UP上调 |
| ECERIFERUM 1 蛋白 protein ECERIFERUM 1 | PGSC0003DMG400002049 | DOWN下调 |
Tab.4 Analysis of DEGs involved in flavonoid metabolism pathway under salt stress in Jizhangshu 12
| 名称 Name | 基因ID Gene ID | 表达模式 Expression pattern |
|---|---|---|
| 查尔酮合成酶 Chalcone synthase G | PGSC0003DMG400008633 PGSC0003DMG400019110 PGSC0003DMG400029620 | UP上调 UP上调 DOWN下调 |
| 乙酰辅酶A苄醇 乙酰转移酶 Acetyl-CoA-benzylalcohol acetyltransferase-like | PGSC0003DMG400029256 PGSC0003DMG400029262 | DOWN下调 |
| 黄烷酮3-羟化酶 Flavanone 3-hydroxylase | PGSC0003DMG400003563 PGSC0003DMG400011929 | DOWN下调 UP上调 |
| ECERIFERUM 1 蛋白 protein ECERIFERUM 1 | PGSC0003DMG400002049 | DOWN下调 |
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