2株猪繁殖与呼吸综合征病毒海南株的ORF5基因分析

ORF5 gene analysis of two porcine reproductive and respiratory syndrome virus strains from hainan province

  • 摘要: 【目的】 鉴定我国海南省新发现的2株猪繁殖与呼吸综合征病毒株HNHK1-2021和HNLG1-2021的进化关系。 【方法】 采用PCR方法对ORF5基因进行扩增和序列测定,利用MegAlign软件进行多重序列比对,利用MEGA X软件邻接法构建进化树。 【结果】 PRRSV HNHK1-2021和HNLG1-2021毒株核苷酸相似性为82.9%,推导氨基酸相似性为82.6%。HNHK1-2021毒株和NADC30类 PRRSV、QYYZ类 PRRSV、VR-2332类PRRSV以及JXA1类PRRSV序列比对,80.8% ~ 82.8%、90.2% ~ 92.0%、82.1%~83.4%、81.9%~84.4%,推导氨基酸相似性分别为82.1% ~ 84.6%、91.5% ~ 94.5%、80.1% ~ 83.1%、82.6% ~ 84.6%;HNLG1-2021毒株和NADC30类PRRSV、QYYZ类PRRSV、VR2332类PRRSV以及JXA1类PRRSV序列比对,核苷酸相似性分别为83.7% ~ 84.6%、81.8% ~ 83.6%、97.7% ~ 99.5%、85.6% ~ 90.4%,推导氨基酸相似性为83.6% ~ 85.1%、81.1% ~ 82.6%、96.0% ~ 98.5%,86.1% ~ 90.5%。 【结论】 2株病毒株均属于北美型PRRSV,HNHK1-2021毒株属于QYYZ类PRRSV(谱系3)。HNLG1-2021毒株属于VR-2332类PRRSV(谱系5)。

     

    Abstract: 【Objective】 This project aims to identify the evolutionary relationship of two newly discovered porcine reproductive and respiratory syndrome virus strains HNHK1-2021 and HNLG1-2021 in Hainan,China. 【Methods】 The ORF5 gene was amplified and sequenced by PCR method. Multiple sequence alignment was performed using MegAlign software, and phylogenetic tree was constructed using MEGA X software neighbor joining method. 【Results】 The nucleotide similarity of PRRSV HNHK1-2021 and HNLG1-2021 strains was 82.9%, and the deduced amino acid similarity was 82.6%. HNHK1-2021 strain and NADC30-like PRRSV, QYYZ-like PRRSV, VR2332-like PRRSV and JXA1-like PRRSV sequence alignment: 80.8%-82.8%, 90.2%-92.0%, 82.1%-83.4%, 81.9%-84.4%,deducing the amino acid similarity was 82.1%-84.6%, 91.5%-94.5%, 80.1%-83.1%, 82.6%-84.6%; HNLG1-2021 strain and NADC30 PRRSV, QYYZ PRRSV, VR2332 PRRSV and JXA1 PRRSV sequence alignment, the nucleotide similarity of which was 83.7%-84.6%、81.8%-83.6%, 97.7%-99.5%, 85.6%-90.4%, the deduced amino acid similarity was 83.6%-85.1%, 81.1%-82.6%, 96%-98.5%, 86.1%-90.5%. 【Conclusion】 The two virus strains belong to the North American type PRRSV, and the HNHK1-2021 strain belongs to the QYYZ class PRRSV (lineage 3). The HNLG1-2021 strain belongs to the VR-2332 class of PRRSVs (lineage 5).

     

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