新疆农业科学 ›› 2024, Vol. 61 ›› Issue (7): 1605-1614.DOI: 10.6048/j.issn.1001-4330.2024.07.006
• 作物遗传育种·种质资源·分子遗传学·耕作栽培·生理生化 • 上一篇 下一篇
杨彩霞1,2(), 顾炜2,3, 关媛2,3, 瞿静涛2,3, 党冬冬2,3, 吴鹏昊1(
), 郑洪建2,3(
)
收稿日期:
2023-12-17
出版日期:
2024-07-20
发布日期:
2024-09-04
通信作者:
吴鹏昊(1984-),男,新疆人,教授,研究方向为玉米遗传育种,(E-mail)craie788@126.com;作者简介:
杨彩霞(1997-),女,重庆人,硕士研究生,研究方向为玉米遗传育种,(E-mail)yangcx4760@163.com
基金资助:
YANG Caixia1,2(), GU Wei2,3, GUAN Yuan2,3, QU Jingtao2,3, DANG Dongdong2,3, WU Penghao1(
), ZHENG Hongjian2,3(
)
Received:
2023-12-17
Published:
2024-07-20
Online:
2024-09-04
Supported by:
摘要:
【目的】研究甜玉米基因Sugary1(Su1)序列,分析核苷酸多态性及检验,研究不同来源甜玉米中的Su1的等位变异位点,为甜玉米的品种改良和提高品质提供理论基础。【方法】以B73的Su1基因组序列为模板,对170份甜玉米自交系的Su1基因进行测序,研究玉米Su1基因序列的多态性。【结果】共有97个核苷酸位点发生变异,包含85个SNP位点,12个InDel位点。其中,位于编码区的SNP位点12个,InDel位点0个;位于非编码区的SNP位点85个,InDel位点12个。编码区中SNP位点同义突变有5个,非同义突变7个。自交系材料分为76个单倍型,该基因编码区序列将自交系材料分为47种单倍型。【结论】甜玉米Su1基因经历了明显的人工选择。
中图分类号:
杨彩霞, 顾炜, 关媛, 瞿静涛, 党冬冬, 吴鹏昊, 郑洪建. 甜玉米基因Sugary1(Su1)序列的变异分析[J]. 新疆农业科学, 2024, 61(7): 1605-1614.
YANG Caixia, GU Wei, GUAN Yuan, QU Jingtao, DANG Dongdong, WU Penghao, ZHENG Hongjian. Variation analysis of sweetness gene Sugary1 (Su1) sequence in Sweet corn[J]. Xinjiang Agricultural Sciences, 2024, 61(7): 1605-1614.
引物 Primers | 序列(5'-3') Sequences(5'-3') | 产物长度 Product length(bp) | 退火温度 Melting temperature(℃) |
---|---|---|---|
1-F | CAGAAACTGATTGCTGGGTG | 1 131 | 60 |
1-R | GGCAGGGCATTAGCTCTATAC | ||
2-F | AGCTTATAGGAAGAGATGGATAATT | 1 445 | 58 |
2-R | AGAGGTGTCCCTGTCGTAATC | ||
3-F | CAGATACTGGGTAACAGAAATGC | 1 301 | 58 |
3-R | GGACTGATAGATGGCTAAATGG | ||
4-F | CCCCTCACTGAATCCCATAAC | 1 441 | 60 |
4-R | CTTTTCTCTGCTCAACCCACAT | ||
5-F | AGGACTTCCCAGCCCAACT | 1 457 | 58 |
5-R | CCAGCATACCACTGACTACAAAT | ||
6-F | TCCGAAGATTAAGGAAGAGG | 1 467 | 60 |
6-R | AACTACCGACAACAGAGCAAC |
表1 Su1基因引物序列信息
Tab.1 Primer sequence information of Su1 gene
引物 Primers | 序列(5'-3') Sequences(5'-3') | 产物长度 Product length(bp) | 退火温度 Melting temperature(℃) |
---|---|---|---|
1-F | CAGAAACTGATTGCTGGGTG | 1 131 | 60 |
1-R | GGCAGGGCATTAGCTCTATAC | ||
2-F | AGCTTATAGGAAGAGATGGATAATT | 1 445 | 58 |
2-R | AGAGGTGTCCCTGTCGTAATC | ||
3-F | CAGATACTGGGTAACAGAAATGC | 1 301 | 58 |
3-R | GGACTGATAGATGGCTAAATGG | ||
4-F | CCCCTCACTGAATCCCATAAC | 1 441 | 60 |
4-R | CTTTTCTCTGCTCAACCCACAT | ||
5-F | AGGACTTCCCAGCCCAACT | 1 457 | 58 |
5-R | CCAGCATACCACTGACTACAAAT | ||
6-F | TCCGAAGATTAAGGAAGAGG | 1 467 | 60 |
6-R | AACTACCGACAACAGAGCAAC |
图1 甜玉米Su1基因引物检测部分材料PCR扩增电泳图 注: A:引物1-F/1-R; B:引物2-F/2-R; C:引物3-F/3-R; D:引物4-F/4-R; E:引物5-F/5-R;F:引物6-F/6-R
Fig.1 PCR amplification electrophoresis map of Su1 gene primer detection partial materials in sweet corn Note: A : primer 1-F/1-R; B : primer 2-F/2-R; C :primer 3-F/3-R; D : primer 4-F/4-R; E : Primer 5-F/5-R; F : Primer 6-F/6-R
位点 Site | 多态类型 Polymorphic type | 频率 Frequence | 位置 Location | 密码子变化 Coding change | 氨基酸变化 Amino Acid Mutation |
---|---|---|---|---|---|
InDel_261-269 | -/GTCACGA | 0.48 | intron3 | ||
SNP_285 | G/A | 0.49 | intron3 | ||
InDel_290 | -/T | 0.20 | intron3 | ||
SNP_328 | A/G | 0.71 | intron | ||
InDel_389-419 | TCTCGTTTGCAGGTTCAAATGGAGTGAAGTT /- | 0.48 | intron3 | ||
SNP_734 | A/T | 0.22 | intron4 | ||
SNP_746 | G/A | 0.22 | intron4 | ||
SNP_770 | G/T | 0.49 | intron4 | ||
SNP_863 | T/C | 0.22 | intron4 | ||
SNP_901 | A/G | 0.71 | intron4 | ||
InDel_930 | T/- | 0.21 | intron4 | ||
SNP_1106 | G/C | 0.55 | exon5 | GTG/GTC | n(V/V) |
SNP_1364 | A/G | 0.18 | intron5 | ||
SNP_1389 | A/G | 0.19 | intron5 | ||
SNP_1403 | T/C | 0.20 | intron5 | ||
SNP_1572 | A/G | 0.59 | intron6 | ||
SNP_1587 | C/T | 0.19 | intron6 | ||
SNP_1836 | C/T | 0.19 | intron7 | ||
SNP_1861 | A/G | 0.18 | intron7 | ||
SNP_2054 | G/A | 0.56 | intron8 | ||
SNP_2067 | T/G | 0.56 | intron8 | ||
SNP_2085 | T/C | 0.36 | intron8 | ||
SNP_2137 | T/C | 0.36 | intron8 | ||
SNP_2498 | A/G | 0.58 | exon10 | AAT/AGT | N/S |
SNP_2524 | A/T | 0.50 | intron10 | ||
InDel_2542 | T/- | 0.51 | intron10 | ||
SNP_2571 | A/G | 0.74 | intron10 | ||
SNP_2586 | G/A | 0.24 | intron10 | ||
SNP_2650 | C/T | 0.49 | intron10 | ||
SNP_2713 | C/T | 0.50 | intron10 | ||
InDel_2777 | -/AAG | 0.51 | intron10 | ||
SNP_2880 | C/T | 0.74 | intron10 | ||
SNP_2881 | A/G | 0.51 | intron10 | ||
InDel_2910 | -/C | 0.24 | intron10 | ||
SNP_3076 | T/A | 0.24 | intron10 | ||
SNP_3107 | A/G | 0.51 | intron10 | ||
SNP_3432 | T/C | 0.20 | intron10 | ||
SNP_3455 | A/C | 0.74 | intron10 | ||
InDel_3629-3635 | CTGCCA/- | 0.18 | intron10 | ||
SNP_3636 | A/G | 0.04 | intron10 | ||
SNP_3664 | T/C | 0.44 | intron10 | ||
SNP_3725 | C/A | 0.45 | intron10 | ||
SNP_3808 | T/C | 0.19 | intron10 | ||
SNP_3856 | C/T | 0.51 | intron10 | ||
SNP_4070 | A/G | 0.52 | intron10 | ||
SNP_4073 | A/G | 0.54 | intron10 | ||
A/T | 0.22 | intron10 | |||
SNP_4153 | T/A | 0.76 | intron10 | ||
SNP_4316 | T/C | 0.76 | intron11 | ||
SNP_4322 | G/A | 0.52 | intron11 | ||
SNP_4329 | G/C | 0.22 | intron11 | ||
SNP_4386 | T/A | 0.22 | intron11 | ||
SNP_4479 | C/T | 0.22 | intron11 | ||
SNP_4685 | C/A | 0.21 | intron11 | ||
SNP_4820 | A/C | 0.48 | intron11 | ||
SNP_5037 | T/C | 0.28 | intron11 | ||
SNP_5071 | G/A | 0.50 | intron11 | ||
SNP_5185 | C/G | 0.74 | intron12 | ||
SNP_5292 | A/C | 0.25 | intron12 | ||
SNP_5369 | G/A | 0.24 | intron12 | ||
SNP_5406 | G/T | 0.75 | intron12 | ||
SNP_5503 | G/T | 0.50 | intron12 | ||
SNP_5522 | G/A | 0.49 | intron12 | ||
SNP_5758 | T/C | 0.16 | intron13 | ||
SNP_5845 | C/A | 0.49 | intron13 | ||
SNP_6094 | T/C | 0.75 | intron14 | ||
SNP_6169 | T/C | 0.72 | intron14 | ||
SNP_6283 | A/C | 0.71 | intron14 | ||
SNP_6123 | G/A | 0.25 | intron14 | ||
SNP_6342 | C/A | 0.72 | intron14 | ||
SNP_6391 | C/A | 0.24 | intron14 | ||
InDel_6449 | T/- | 0.24 | intron14 | ||
SNP_6594 | C/A | 0.47 | intron15 | ||
SNP_6597 | G/A | 0.24 | intron15 | ||
SNP_6623 | A/G | 0.47 | intron15 | ||
InDel_6628 | C/- | 0.47 | intron15 | ||
SNP_6679 | T/C | 0.24 | exon16 | AAT/AAC | n(N/N) |
SNP_6686 | C/T | 0.47 | exon16 | CGT/TGT | R/C |
SNP_6721 | G/T | 0.47 | exon16 | TTG/TTT | L/F |
SNP_6746 | A/G | 0.02 | exon16 | AAA/GAA | K/E |
SNP_6773 | C/T | 0.47 | intron16 | ||
SNP_6807 | C/A | 0.24 | intron16 | ||
SNP_6870 | G/T | 0.71 | intron16 | ||
SNP_6887 | A/G | 0.71 | exon17 | AAA/GAA | K/E |
SNP_6956 | C/T | 0.46 | exon17 | CCC/CCT | n(P/P) |
SNP_7053 | G/A | 0.46 | intron17 | ||
InDel_7083 | G/- | 0.23 | intron17 | ||
InDel_7084 | A/- | 0.23 | intron17 | ||
SNP_7086 | C/T | 0.46 | intron17 | ||
SNP_7087 | G/A | 0.23 | intron17 | ||
SNP_7192 | T/C | 0.69 | exon18 | GTT/GTC | n(V/V) |
SNP_7218 | G/A | 0.46 | exon18 | CGA/CAA | R/Q |
SNP_7279 | G/A | 0.17 | exon18 | CTG/CTA | n(L/L) |
SNP_7379 | G/C | 0.46 | exon18 | GAT/CAT | D/H |
SNP_7395 | A/G | 0.69 | 3'UTR | ||
SNP_7397 | A/T | 0.46 | 3'UTR | ||
SNP_7414 | A/G | 0.69 | 3'UTR |
表2 甜玉米Su1基因编码区多态性
Tab.2 Polymorphism of Su1 gene coding region in sweet corn
位点 Site | 多态类型 Polymorphic type | 频率 Frequence | 位置 Location | 密码子变化 Coding change | 氨基酸变化 Amino Acid Mutation |
---|---|---|---|---|---|
InDel_261-269 | -/GTCACGA | 0.48 | intron3 | ||
SNP_285 | G/A | 0.49 | intron3 | ||
InDel_290 | -/T | 0.20 | intron3 | ||
SNP_328 | A/G | 0.71 | intron | ||
InDel_389-419 | TCTCGTTTGCAGGTTCAAATGGAGTGAAGTT /- | 0.48 | intron3 | ||
SNP_734 | A/T | 0.22 | intron4 | ||
SNP_746 | G/A | 0.22 | intron4 | ||
SNP_770 | G/T | 0.49 | intron4 | ||
SNP_863 | T/C | 0.22 | intron4 | ||
SNP_901 | A/G | 0.71 | intron4 | ||
InDel_930 | T/- | 0.21 | intron4 | ||
SNP_1106 | G/C | 0.55 | exon5 | GTG/GTC | n(V/V) |
SNP_1364 | A/G | 0.18 | intron5 | ||
SNP_1389 | A/G | 0.19 | intron5 | ||
SNP_1403 | T/C | 0.20 | intron5 | ||
SNP_1572 | A/G | 0.59 | intron6 | ||
SNP_1587 | C/T | 0.19 | intron6 | ||
SNP_1836 | C/T | 0.19 | intron7 | ||
SNP_1861 | A/G | 0.18 | intron7 | ||
SNP_2054 | G/A | 0.56 | intron8 | ||
SNP_2067 | T/G | 0.56 | intron8 | ||
SNP_2085 | T/C | 0.36 | intron8 | ||
SNP_2137 | T/C | 0.36 | intron8 | ||
SNP_2498 | A/G | 0.58 | exon10 | AAT/AGT | N/S |
SNP_2524 | A/T | 0.50 | intron10 | ||
InDel_2542 | T/- | 0.51 | intron10 | ||
SNP_2571 | A/G | 0.74 | intron10 | ||
SNP_2586 | G/A | 0.24 | intron10 | ||
SNP_2650 | C/T | 0.49 | intron10 | ||
SNP_2713 | C/T | 0.50 | intron10 | ||
InDel_2777 | -/AAG | 0.51 | intron10 | ||
SNP_2880 | C/T | 0.74 | intron10 | ||
SNP_2881 | A/G | 0.51 | intron10 | ||
InDel_2910 | -/C | 0.24 | intron10 | ||
SNP_3076 | T/A | 0.24 | intron10 | ||
SNP_3107 | A/G | 0.51 | intron10 | ||
SNP_3432 | T/C | 0.20 | intron10 | ||
SNP_3455 | A/C | 0.74 | intron10 | ||
InDel_3629-3635 | CTGCCA/- | 0.18 | intron10 | ||
SNP_3636 | A/G | 0.04 | intron10 | ||
SNP_3664 | T/C | 0.44 | intron10 | ||
SNP_3725 | C/A | 0.45 | intron10 | ||
SNP_3808 | T/C | 0.19 | intron10 | ||
SNP_3856 | C/T | 0.51 | intron10 | ||
SNP_4070 | A/G | 0.52 | intron10 | ||
SNP_4073 | A/G | 0.54 | intron10 | ||
A/T | 0.22 | intron10 | |||
SNP_4153 | T/A | 0.76 | intron10 | ||
SNP_4316 | T/C | 0.76 | intron11 | ||
SNP_4322 | G/A | 0.52 | intron11 | ||
SNP_4329 | G/C | 0.22 | intron11 | ||
SNP_4386 | T/A | 0.22 | intron11 | ||
SNP_4479 | C/T | 0.22 | intron11 | ||
SNP_4685 | C/A | 0.21 | intron11 | ||
SNP_4820 | A/C | 0.48 | intron11 | ||
SNP_5037 | T/C | 0.28 | intron11 | ||
SNP_5071 | G/A | 0.50 | intron11 | ||
SNP_5185 | C/G | 0.74 | intron12 | ||
SNP_5292 | A/C | 0.25 | intron12 | ||
SNP_5369 | G/A | 0.24 | intron12 | ||
SNP_5406 | G/T | 0.75 | intron12 | ||
SNP_5503 | G/T | 0.50 | intron12 | ||
SNP_5522 | G/A | 0.49 | intron12 | ||
SNP_5758 | T/C | 0.16 | intron13 | ||
SNP_5845 | C/A | 0.49 | intron13 | ||
SNP_6094 | T/C | 0.75 | intron14 | ||
SNP_6169 | T/C | 0.72 | intron14 | ||
SNP_6283 | A/C | 0.71 | intron14 | ||
SNP_6123 | G/A | 0.25 | intron14 | ||
SNP_6342 | C/A | 0.72 | intron14 | ||
SNP_6391 | C/A | 0.24 | intron14 | ||
InDel_6449 | T/- | 0.24 | intron14 | ||
SNP_6594 | C/A | 0.47 | intron15 | ||
SNP_6597 | G/A | 0.24 | intron15 | ||
SNP_6623 | A/G | 0.47 | intron15 | ||
InDel_6628 | C/- | 0.47 | intron15 | ||
SNP_6679 | T/C | 0.24 | exon16 | AAT/AAC | n(N/N) |
SNP_6686 | C/T | 0.47 | exon16 | CGT/TGT | R/C |
SNP_6721 | G/T | 0.47 | exon16 | TTG/TTT | L/F |
SNP_6746 | A/G | 0.02 | exon16 | AAA/GAA | K/E |
SNP_6773 | C/T | 0.47 | intron16 | ||
SNP_6807 | C/A | 0.24 | intron16 | ||
SNP_6870 | G/T | 0.71 | intron16 | ||
SNP_6887 | A/G | 0.71 | exon17 | AAA/GAA | K/E |
SNP_6956 | C/T | 0.46 | exon17 | CCC/CCT | n(P/P) |
SNP_7053 | G/A | 0.46 | intron17 | ||
InDel_7083 | G/- | 0.23 | intron17 | ||
InDel_7084 | A/- | 0.23 | intron17 | ||
SNP_7086 | C/T | 0.46 | intron17 | ||
SNP_7087 | G/A | 0.23 | intron17 | ||
SNP_7192 | T/C | 0.69 | exon18 | GTT/GTC | n(V/V) |
SNP_7218 | G/A | 0.46 | exon18 | CGA/CAA | R/Q |
SNP_7279 | G/A | 0.17 | exon18 | CTG/CTA | n(L/L) |
SNP_7379 | G/C | 0.46 | exon18 | GAT/CAT | D/H |
SNP_7395 | A/G | 0.69 | 3'UTR | ||
SNP_7397 | A/T | 0.46 | 3'UTR | ||
SNP_7414 | A/G | 0.69 | 3'UTR |
参数 Parameter | 序列长度 Product length (bp) | SNPs+InDel 数目 Number of SNP+Indel | SNP+Indel 变异频率 Frequency of SNP+Indel (bp) | SNP 数目 Number of SNP | SNP 频率 Frequency of SNP (bp) | InDels 数目 Number of Indel | Indel 频率 Frequency of Indel (bp) |
---|---|---|---|---|---|---|---|
全长 | 7 438 | 161 | 0.022 | 86 | 0.012 | 75 | 0.010 |
intron3 | 331 | 41 | 0.124 | 2 | 0.006 | 39 | 0.118 |
exon4 | 154 | 0 | 0 | 0 | 0 | 0 | 0 |
intron4 | 456 | 7 | 0.015 | 6 | 0.013 | 1 | 0.002 |
exon5 | 77 | 1 | 0.013 | 1 | 0.013 | 0 | 0 |
intron5 | 247 | 3 | 0.012 | 3 | 0.012 | 0 | 0 |
exon6 | 164 | 0 | 0 | 0 | 0 | 0 | 0 |
intron6 | 91 | 2 | 0.022 | 2 | 0.022 | 0 | 0 |
exon7 | 107 | 0 | 0 | 0 | 0 | 0 | 0 |
intron7 | 118 | 2 | 0.017 | 2 | 0.017 | 0 | 0 |
exon8 | 85 | 0 | 0 | 0 | 0 | 0 | 0 |
intron8 | 270 | 4 | 0.015 | 4 | 0.015 | 0 | 0 |
exon9 | 72 | 0 | 0 | 0 | 0 | 0 | 0 |
intron9 | 73 | 0 | 0 | 0 | 0 | 0 | 0 |
exon10 | 127 | 1 | 0.008 | 1 | 0.008 | 0 | 0 |
intron10 | 1716 | 32 | 0.019 | 19 | 0.011 | 13 | 0.008 |
exon11 | 87 | 0 | 0 | 0 | 0 | 0 | 0 |
intron11 | 776 | 26 | 0.034 | 9 | 0.012 | 17 | 0.022 |
exon12 | 94 | 0 | 0 | 0 | 0 | 0 | 0 |
intron12 | 437 | 6 | 0.014 | 6 | 0.014 | 0 | 0 |
exon13 | 159 | 1 | 0.006 | 1 | 0.006 | 0 | 0 |
intron13 | 223 | 1 | 0.004 | 1 | 0.004 | 0 | 0 |
exon14 | 84 | 0 | 0 | 0 | 0 | 0 | 0 |
intron14 | 421 | 7 | 0.017 | 6 | 0.014 | 1 | 0.002 |
exon15 | 84 | 0 | 0 | 0 | 0 | 0 | 0 |
intron15 | 93 | 4 | 0.043 | 3 | 0.032 | 1 | 0.011 |
exon16 | 79 | 4 | 0.051 | 4 | 0.051 | 0 | 0 |
intron16 | 130 | 3 | 0.023 | 3 | 0.023 | 0 | 0 |
exon17 | 118 | 2 | 0.017 | 2 | 0.017 | 0 | 0 |
intron17 | 125 | 6 | 0.048 | 4 | 0.032 | 2 | 0.016 |
exon18 | 258 | 4 | 0.016 | 4 | 0.016 | 0 | 0 |
表3 甜玉米Su1基因序列变异参数
Tab.3 Parameters for the sequence of sweet corn Su1 gene
参数 Parameter | 序列长度 Product length (bp) | SNPs+InDel 数目 Number of SNP+Indel | SNP+Indel 变异频率 Frequency of SNP+Indel (bp) | SNP 数目 Number of SNP | SNP 频率 Frequency of SNP (bp) | InDels 数目 Number of Indel | Indel 频率 Frequency of Indel (bp) |
---|---|---|---|---|---|---|---|
全长 | 7 438 | 161 | 0.022 | 86 | 0.012 | 75 | 0.010 |
intron3 | 331 | 41 | 0.124 | 2 | 0.006 | 39 | 0.118 |
exon4 | 154 | 0 | 0 | 0 | 0 | 0 | 0 |
intron4 | 456 | 7 | 0.015 | 6 | 0.013 | 1 | 0.002 |
exon5 | 77 | 1 | 0.013 | 1 | 0.013 | 0 | 0 |
intron5 | 247 | 3 | 0.012 | 3 | 0.012 | 0 | 0 |
exon6 | 164 | 0 | 0 | 0 | 0 | 0 | 0 |
intron6 | 91 | 2 | 0.022 | 2 | 0.022 | 0 | 0 |
exon7 | 107 | 0 | 0 | 0 | 0 | 0 | 0 |
intron7 | 118 | 2 | 0.017 | 2 | 0.017 | 0 | 0 |
exon8 | 85 | 0 | 0 | 0 | 0 | 0 | 0 |
intron8 | 270 | 4 | 0.015 | 4 | 0.015 | 0 | 0 |
exon9 | 72 | 0 | 0 | 0 | 0 | 0 | 0 |
intron9 | 73 | 0 | 0 | 0 | 0 | 0 | 0 |
exon10 | 127 | 1 | 0.008 | 1 | 0.008 | 0 | 0 |
intron10 | 1716 | 32 | 0.019 | 19 | 0.011 | 13 | 0.008 |
exon11 | 87 | 0 | 0 | 0 | 0 | 0 | 0 |
intron11 | 776 | 26 | 0.034 | 9 | 0.012 | 17 | 0.022 |
exon12 | 94 | 0 | 0 | 0 | 0 | 0 | 0 |
intron12 | 437 | 6 | 0.014 | 6 | 0.014 | 0 | 0 |
exon13 | 159 | 1 | 0.006 | 1 | 0.006 | 0 | 0 |
intron13 | 223 | 1 | 0.004 | 1 | 0.004 | 0 | 0 |
exon14 | 84 | 0 | 0 | 0 | 0 | 0 | 0 |
intron14 | 421 | 7 | 0.017 | 6 | 0.014 | 1 | 0.002 |
exon15 | 84 | 0 | 0 | 0 | 0 | 0 | 0 |
intron15 | 93 | 4 | 0.043 | 3 | 0.032 | 1 | 0.011 |
exon16 | 79 | 4 | 0.051 | 4 | 0.051 | 0 | 0 |
intron16 | 130 | 3 | 0.023 | 3 | 0.023 | 0 | 0 |
exon17 | 118 | 2 | 0.017 | 2 | 0.017 | 0 | 0 |
intron17 | 125 | 6 | 0.048 | 4 | 0.032 | 2 | 0.016 |
exon18 | 258 | 4 | 0.016 | 4 | 0.016 | 0 | 0 |
π | θ | Tajima’s D | Fu and Li’s D* | Fu and Li’s F* | |||
---|---|---|---|---|---|---|---|
全长 | 0.004 81 | 0.002 7 | 4.140 3 | 2.408 2 | 3.829 | ||
intron3 | 0.003 15 | 0.001 2 | 2.275 31* | 0.646 81 | 1.367 3 | ||
exon4 | 0 | 0 | 0 | 0 | 0 | ||
intron4 | 0.004 31 | 0.002 31 | 1.796 59* | 0.569 9 | 0.774 04 | ||
exon5 | 0.006 47 | 0.002 27 | 0 | 0 | 0 | ||
intron5 | 0.003 77 | 0.002 12 | 1.273 95 | 0.784 19 | 1.112 72 | ||
exon6 | 0 | 0 | 0 | 0 | 0 | ||
intron6 | 0.010 48 | 0.003 85 | 2.414 01 | 0.646 81 | 1.418 9 | ||
exon7 | 0 | 0 | 0 | 0 | 0 | ||
intron7 | 0.005 19 | 0.002 97 | 1.047 98 | 0.646 81 | 0.910 65 | ||
exon8 | 0 | 0 | 0 | 0 | 0 | ||
intron8 | 0.007 12 | 0.002 59 | 3.178 3 | 0.896 55 | 1.952 19* | ||
exon9 | 0 | 0 | 0 | 0 | 0 | ||
intron9 | 0 | 0 | 0 | 0 | 0 | ||
exon10 | 0.003 96 | 0.001 38 | 1.945 52 | 0.462 13 | 1.078 16 | ||
intron10 | 0.004 78 | 0.002 05 | 3.603 8 | 1.748 2 | 2.970 4 | ||
exon11 | 0 | 0 | 0 | 0 | 0 | ||
intron11 | 0.004 81 | 0.002 07 | 3.058 0 | 1.283 1 | 2.284 9 | ||
exon12 | 0 | 0 | 0 | 0 | 0 | ||
intron12 | 0.005 75 | 0.002 4 | 2.893 4 | 1.077 5 | 2.017 07* | ||
exon13 | 0 | 0 | 0 | 0 | 0 | ||
intron13 | 0.002 25 | 0.000 78 | 1.945 52 | 0.462 13 | 1.078 16 | ||
exon14 | 0 | 0 | 0 | 0 | 0 | ||
intron14 | 0.005 6 | 0.002 5 | 2.572 35* | 1.077 05 | 1.886 68 | ||
exon15 | 0 | 0 | 0 | 0 | 0 | ||
intron15 | 0.014 81 | 0.005 7 | 2.617 73* | 0.784 19 | 1.625 72 | ||
exon16 | 0.017 9 | 0.008 86 | 1.858 31 | 0.896 55 | 1.436 61 | ||
intron16 | 0.009 91 | 0.004 04 | 2.387 60* | 0.784 19 | 1.537 87 | ||
exon17 | 0.007 81 | 0.002 97 | 2.285 467* | 0.646 81 | 1.370 78 | ||
intron17 | 0.013 35 | 0.005 69 | 2.450 52* | 0.896 55 | 1.667 92 |
表4 中性检验相关参数
Tab.4 Neutral test related parameters
π | θ | Tajima’s D | Fu and Li’s D* | Fu and Li’s F* | |||
---|---|---|---|---|---|---|---|
全长 | 0.004 81 | 0.002 7 | 4.140 3 | 2.408 2 | 3.829 | ||
intron3 | 0.003 15 | 0.001 2 | 2.275 31* | 0.646 81 | 1.367 3 | ||
exon4 | 0 | 0 | 0 | 0 | 0 | ||
intron4 | 0.004 31 | 0.002 31 | 1.796 59* | 0.569 9 | 0.774 04 | ||
exon5 | 0.006 47 | 0.002 27 | 0 | 0 | 0 | ||
intron5 | 0.003 77 | 0.002 12 | 1.273 95 | 0.784 19 | 1.112 72 | ||
exon6 | 0 | 0 | 0 | 0 | 0 | ||
intron6 | 0.010 48 | 0.003 85 | 2.414 01 | 0.646 81 | 1.418 9 | ||
exon7 | 0 | 0 | 0 | 0 | 0 | ||
intron7 | 0.005 19 | 0.002 97 | 1.047 98 | 0.646 81 | 0.910 65 | ||
exon8 | 0 | 0 | 0 | 0 | 0 | ||
intron8 | 0.007 12 | 0.002 59 | 3.178 3 | 0.896 55 | 1.952 19* | ||
exon9 | 0 | 0 | 0 | 0 | 0 | ||
intron9 | 0 | 0 | 0 | 0 | 0 | ||
exon10 | 0.003 96 | 0.001 38 | 1.945 52 | 0.462 13 | 1.078 16 | ||
intron10 | 0.004 78 | 0.002 05 | 3.603 8 | 1.748 2 | 2.970 4 | ||
exon11 | 0 | 0 | 0 | 0 | 0 | ||
intron11 | 0.004 81 | 0.002 07 | 3.058 0 | 1.283 1 | 2.284 9 | ||
exon12 | 0 | 0 | 0 | 0 | 0 | ||
intron12 | 0.005 75 | 0.002 4 | 2.893 4 | 1.077 5 | 2.017 07* | ||
exon13 | 0 | 0 | 0 | 0 | 0 | ||
intron13 | 0.002 25 | 0.000 78 | 1.945 52 | 0.462 13 | 1.078 16 | ||
exon14 | 0 | 0 | 0 | 0 | 0 | ||
intron14 | 0.005 6 | 0.002 5 | 2.572 35* | 1.077 05 | 1.886 68 | ||
exon15 | 0 | 0 | 0 | 0 | 0 | ||
intron15 | 0.014 81 | 0.005 7 | 2.617 73* | 0.784 19 | 1.625 72 | ||
exon16 | 0.017 9 | 0.008 86 | 1.858 31 | 0.896 55 | 1.436 61 | ||
intron16 | 0.009 91 | 0.004 04 | 2.387 60* | 0.784 19 | 1.537 87 | ||
exon17 | 0.007 81 | 0.002 97 | 2.285 467* | 0.646 81 | 1.370 78 | ||
intron17 | 0.013 35 | 0.005 69 | 2.450 52* | 0.896 55 | 1.667 92 |
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